| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| ApplicationSingletonProvider | 49 | 20 | 9 | 0.7812578.1% |
|
| ApplicationSingletonProvider.ApplicationSingletonI | 60 | 0 | 0 | -1.0 - |
|
Class ApplicationSingletonProvider |
Line # 49 |
20 |
9 |
0.7812578.1% |
|---|---|---|---|---|
| ApplicationSingletonProvider() ApplicationSingletonProvider() | 7272 | 0.00 | 1.01 | -1.0 -1.0 - |
| getContextMap() : Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> getContextMap() : Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> | 8383 | 5.05 | 3.03 | 0.6666667 0.666666766.7% |
| getInstance(Class<T>) : T getInstance(Class<T>) : T | 109109 | 12.012 | 3.03 | 0.85714287 0.8571428785.7% |
| removeInstance(Class<? extends ApplicationSingletonI>) : void removeInstance(Class<? extends ApplicationSingletonI>) : void | 154154 | 3.03 | 2.02 | 0.8 0.880% |
|
Class ApplicationSingletonProvider.ApplicationSingletonI |
Line # 60 |
0 |
0 |
-1.0 - |
|---|
|
0.625
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.625
|
jalview.analysis.AlignmentSorterTest.testSortByFeature_scorejalview.analysis.AlignmentSorterTest.testSortByFeature_score | 1PASS | ||
|
0.625
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.625
|
jalview.analysis.AlignmentUtilsTests.testFindCdsForProtein_noUTRjalview.analysis.AlignmentUtilsTests.testFindCdsForProtein_noUTR | 1PASS | ||
|
0.625
|
jalview.io.ScoreMatrixFileTest.testParse_ncbiFormatjalview.io.ScoreMatrixFileTest.testParse_ncbiFormat | 1PASS | ||
|
0.625
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.625
|
jalview.datamodel.SequenceFeatureTest.testGetDetailsReportjalview.datamodel.SequenceFeatureTest.testGetDetailsReport | 1PASS | ||
|
0.625
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.4375
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testForNamejalview.io.FileFormatsTest.testForName | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_showForSelected | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeaturejalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeature | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolParserTest.testParse_missingResiduesjalview.ext.jmol.JmolParserTest.testParse_missingResidues | 1PASS | ||
|
0.375
|
jalview.gui.JvOptionPaneTest.showMessageDialogFamilyTestjalview.gui.JvOptionPaneTest.showMessageDialogFamilyTest | 1PASS | ||
|
0.375
|
jalview.analysis.FinderTest.testFindAlljalview.analysis.FinderTest.testFindAll | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrandjalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations | 1PASS | ||
|
0.375
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.375
|
jalview.util.FormatTest.testFormat_scientificjalview.util.FormatTest.testFormat_scientific | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_noPropEntry_defaultUrlReturnedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_noPropEntry_defaultUrlReturned | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testDeregisterFileFormatjalview.io.FileFormatsTest.testDeregisterFileFormat | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_mismatchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_mismatchingAnnotations | 1PASS | ||
|
0.375
|
jalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTestjalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTest | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationLabelsTest.testDrawLabelsjalview.gui.AnnotationLabelsTest.testDrawLabels | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.analysis.FinderTest.testFindAll_sequenceIdsjalview.analysis.FinderTest.testFindAll_sequenceIds | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_mixedStrandjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_mixedStrand | 1PASS | ||
|
0.375
|
jalview.io.AnnotationFileIOTest.exampleAnnotationFileIOjalview.io.AnnotationFileIOTest.exampleAnnotationFileIO | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdnajalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdna | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrappedjalview.gui.SeqPanelTest.testFindColumn_and_FindAlignmentColumn_wrapped | 1PASS | ||
|
0.375
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.EmblXmlSourceTest.testGetSequencejalview.ws.dbsources.EmblXmlSourceTest.testGetSequence | 1PASS | ||
|
0.375
|
jalview.urls.DesktopUrlProviderFactoryTest.testCreateUrlProviderjalview.urls.DesktopUrlProviderFactoryTest.testCreateUrlProvider | 1PASS | ||
|
0.375
|
jalview.io.AnnotationFileIOTest.testProviderRestorejalview.io.AnnotationFileIOTest.testProviderRestore | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.io.vcf.VCFLoaderTest.testLoadVCFContigjalview.io.vcf.VCFLoaderTest.testLoadVCFContig | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.gui.ProgressBarTest.testConstructor_wrongLayoutjalview.gui.ProgressBarTest.testConstructor_wrongLayout | 1PASS | ||
|
0.375
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthjalview.io.TCoffeeScoreFileTest.testHeightAndWidth | 1PASS | ||
|
0.375
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_twoScoresjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_twoScores | 1PASS | ||
|
0.375
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.readGff3Filejalview.io.FeaturesFileTest.readGff3File | 1PASS | ||
|
0.375
|
jalview.schemes.Blosum62ColourSchemeTest.testFindColourjalview.schemes.Blosum62ColourSchemeTest.testFindColour | 1PASS | ||
|
0.375
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testGetTranscriptFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetTranscriptFeatures | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileViewTest.testGetTypeDescriptionjalview.io.JalviewFileViewTest.testGetTypeDescription | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testGetWritableFormatsjalview.io.FileFormatsTest.testGetWritableFormats | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotationjalview.workers.AlignCaclManager2Test.testIsWorkingWithAnnotation | 1PASS | ||
|
0.375
|
jalview.structure.StructureCommandTest.testEqualsjalview.structure.StructureCommandTest.testEquals | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testShadeCalculation_aboveThresholdjalview.schemes.AnnotationColourGradientTest.testShadeCalculation_aboveThreshold | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testTqli_matchesMatrixjalview.math.SparseMatrixTest.testTqli_matchesMatrix | 1PASS | ||
|
0.375
|
jalview.schemes.ColourSchemesTest.testNameExistsjalview.schemes.ColourSchemesTest.testNameExists | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
|
0.375
|
jalview.datamodel.HiddenSequencesTest.testHideShowSequence_withHiddenRepSequencejalview.datamodel.HiddenSequencesTest.testHideShowSequence_withHiddenRepSequence | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.schemes.FeatureColourTest.testGetColor_colourByAttributeTextjalview.schemes.FeatureColourTest.testGetColor_colourByAttributeText | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedRegionjalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion | 1PASS | ||
|
0.375
|
jalview.urls.CustomUrlProviderTest.testDefaultUrljalview.urls.CustomUrlProviderTest.testDefaultUrl | 1PASS | ||
|
0.375
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixjalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrix | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentjalview.datamodel.AlignmentTest.testCreateDatasetAlignment | 1PASS | ||
|
0.375
|
jalview.schemes.ResiduePropertiesTest.testGetResidues_peptidejalview.schemes.ResiduePropertiesTest.testGetResidues_peptide | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotations | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
|
0.375
|
jalview.urls.IdentifiersUrlProviderTest.testUrlLinksjalview.urls.IdentifiersUrlProviderTest.testUrlLinks | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
|
0.375
|
jalview.gui.SeqCanvasTest.testClear_HighlightAndSelectionjalview.gui.SeqCanvasTest.testClear_HighlightAndSelection | 1PASS | ||
|
0.375
|
jalview.structure.StructureMappingTest.testEqualsjalview.structure.StructureMappingTest.testEquals | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.io.cache.AppCacheTest.appCacheLimitTestjalview.io.cache.AppCacheTest.appCacheLimitTest | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySet | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
|
0.375
|
jalview.schemes.ColourSchemesTest.testGetColourSchemesjalview.schemes.ColourSchemesTest.testGetColourSchemes | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolParserTest.testLocalPDBIdjalview.ext.jmol.JmolParserTest.testLocalPDBId | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testTranslateCdna_simplejalview.analysis.DnaTest.testTranslateCdna_simple | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.schemes.StrandColourSchemeTest.testFindColourjalview.schemes.StrandColourSchemeTest.testFindColour | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileViewTest.testGetExtensionjalview.io.JalviewFileViewTest.testGetExtension | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
|
0.375
|
jalview.math.RotatableMatrixTest.testPreMultiplyjalview.math.RotatableMatrixTest.testPreMultiply | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_nullsMatchjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_nullsMatch | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGenomeTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblGenomeTest.testGetIdentifyingFeatures | 1PASS | ||
|
0.375
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testRestartCompletedWorkersjalview.workers.AlignCaclManager2Test.testRestartCompletedWorkers | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureMatcherSetTest.testAndjalview.datamodel.features.FeatureMatcherSetTest.testAnd | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.restartOneShotWorkerjalview.workers.AlignCaclManager2Test.restartOneShotWorker | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testFindMinMaxjalview.math.MatrixTest.testFindMinMax | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_regionjalview.util.MappingUtilsTest.testMapSequenceGroup_region | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
mc_view.PDBfileTest.testParsemc_view.PDBfileTest.testParse | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdsTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblCdsTest.testGetIdentifyingFeatures | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testTred_reproduciblejalview.math.SparseMatrixTest.testTred_reproducible | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroup | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefsjalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefs | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_forSubSequencesjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_forSubSequences | 1PASS | ||
|
0.375
|
jalview.analysis.AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompletejalview.analysis.AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete | 1PASS | ||
|
0.375
|
jalview.io.TCoffeeScoreFileTest.testGetAsArrayjalview.io.TCoffeeScoreFileTest.testGetAsArray | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
|
0.375
|
jalview.urls.CustomUrlProviderTest.testUrlLinksjalview.urls.CustomUrlProviderTest.testUrlLinks | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
|
0.375
|
jalview.fts.service.pdb.PDBFTSRestClientTest.getPDBDocFieldsAsCommaDelimitedStringTestjalview.fts.service.pdb.PDBFTSRestClientTest.getPDBDocFieldsAsCommaDelimitedStringTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkDisplayTest.testDisplayColumnNamesjalview.urls.UrlLinkDisplayTest.testDisplayColumnNames | 1PASS | ||
|
0.375
|
jalview.io.RNAMLfileTest.testRnamlSeqImportjalview.io.RNAMLfileTest.testRnamlSeqImport | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree | 1PASS | ||
|
0.375
|
jalview.util.ColorUtilsTest.testToTkCodejalview.util.ColorUtilsTest.testToTkCode | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testIsValidReferencejalview.ext.ensembl.EnsemblCdnaTest.testIsValidReference | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureMatcherTest.testMatches_byAttributejalview.datamodel.features.FeatureMatcherTest.testMatches_byAttribute | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser | 1PASS | ||
|
0.375
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureGroupNotDisplayedjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureGroupNotDisplayed | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.375
|
jalview.gui.SequenceRendererTest.testGetResidueColour_WithGroupjalview.gui.SequenceRendererTest.testGetResidueColour_WithGroup | 1PASS | ||
|
0.375
|
jalview.analysis.AlignSeqTest.testIndexEncode_nucleotidejalview.analysis.AlignSeqTest.testIndexEncode_nucleotide | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testVersionComparisonsjalview.util.LaunchUtilsTest.testVersionComparisons | 1PASS | ||
|
0.375
|
jalview.ws.ebi.HmmerJSONProcessTest.parseJsonResultTestjalview.ws.ebi.HmmerJSONProcessTest.parseJsonResultTest | 1PASS | ||
|
0.375
|
jalview.commands.EditCommandTest.testCut_withFeatures_exhaustivejalview.commands.EditCommandTest.testCut_withFeatures_exhaustive | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.ws.ebi.HmmerJSONProcessTest.parseHitTestjalview.ws.ebi.HmmerJSONProcessTest.parseHitTest | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.375
|
jalview.fts.service.pdb.PDBFTSRestClientTest.getPDBIdColumIndexTestjalview.fts.service.pdb.PDBFTSRestClientTest.getPDBIdColumIndexTest | 1PASS | ||
|
0.375
|
jalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbersjalview.io.TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbers | 1PASS | ||
|
0.375
|
jalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignmentjalview.io.WindowsFileLoadAndSaveTest.loadAndSaveAlignment | 1PASS | ||
|
0.375
|
jalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappingsjalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappings | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.util.ArrayUtilsTest.testReverseIntArrayjalview.util.ArrayUtilsTest.testReverseIntArray | 1PASS | ||
|
0.375
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappojalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappo | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdsTest.testIsValidReferencejalview.ext.ensembl.EnsemblCdsTest.testIsValidReference | 1PASS | ||
|
0.375
|
jalview.util.ColorUtilsTest.testBleachColourjalview.util.ColorUtilsTest.testBleachColour | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_emptyList_propertyResetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_emptyList_propertyReset | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_belowThresholdjalview.schemes.AnnotationColourGradientTest.testFindColour_belowThreshold | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.simpleGff3FileClassjalview.io.FeaturesFileTest.simpleGff3FileClass | 1PASS | ||
|
0.375
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved | 1PASS | ||
|
0.375
|
jalview.util.ColorUtilsTest.testParseColourStringjalview.util.ColorUtilsTest.testParseColourString | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqsjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqs | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.375
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForSelectedjalview.gui.AnnotationChooserTest.testSelectType_hideForSelected | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties | 1PASS | ||
|
0.375
|
jalview.io.gff.InterProScanHelperTest.testProcessProteinMatchjalview.io.gff.InterProScanHelperTest.testProcessProteinMatch | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testBlosum62_valuesjalview.analysis.scoremodels.ScoreMatrixTest.testBlosum62_values | 1PASS | ||
|
0.375
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testAddMapjalview.datamodel.AlignedCodonFrameTest.testAddMap | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testGetAnnotationTypesjalview.gui.AnnotationChooserTest.testGetAnnotationTypes | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotations | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdsTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblCdsTest.testGetGenomicRangesFromFeatures | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.util.FormatTest.testForm_floatjalview.util.FormatTest.testForm_float | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testIsWorkingjalview.workers.AlignCaclManager2Test.testIsWorking | 1PASS | ||
|
0.375
|
jalview.schemes.ColourSchemePropertyTest.testGetColourSchemejalview.schemes.ColourSchemePropertyTest.testGetColourScheme | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testSelectType_showForSelectedjalview.gui.AnnotationChooserTest.testSelectType_showForSelected | 1PASS | ||
|
0.375
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotidejalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotide | 1PASS | ||
|
0.375
|
jalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelectjalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelect | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.schemes.ResiduePropertiesTest.testGetCanonicalAminoAcidjalview.schemes.ResiduePropertiesTest.testGetCanonicalAminoAcid | 1PASS | ||
|
0.375
|
jalview.schemes.UserColourSchemeTest.testToAppletParameterjalview.schemes.UserColourSchemeTest.testToAppletParameter | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkTableModelTest.testCountsjalview.urls.UrlLinkTableModelTest.testCounts | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_verifySequenceNamesUniquifiedjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_verifySequenceNamesUniquified | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixIndexjalview.analysis.scoremodels.ScoreMatrixTest.testGetMatrixIndex | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileViewTest.testGetImageIconjalview.io.JalviewFileViewTest.testGetImageIcon | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testCopyConstructorjalview.datamodel.AlignmentTest.testCopyConstructor | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testShadeCalculation_noThresholdjalview.schemes.AnnotationColourGradientTest.testShadeCalculation_noThreshold | 1PASS | ||
|
0.375
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.displayTDBQueryTestjalview.gui.StructureChooserTest.displayTDBQueryTest | 1PASS | ||
|
0.375
|
jalview.util.ComparisonTest.testIsGapjalview.util.ComparisonTest.testIsGap | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testTranslateCdna_hiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_hiddenColumns | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceFeatureTest.testCopyConstructorsjalview.datamodel.SequenceFeatureTest.testCopyConstructors | 1PASS | ||
|
0.375
|
jalview.analysis.AlignmentUtilsTests.testFindCdsPositionsjalview.analysis.AlignmentUtilsTests.testFindCdsPositions | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnlyjalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnly | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_noThresholdjalview.schemes.AnnotationColourGradientTest.testFindColour_noThreshold | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testRestartCancelsWorkersjalview.workers.AlignCaclManager2Test.testRestartCancelsWorkers | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.gui.JvOptionPaneTest.showInternalMessageDialogFamilyTestjalview.gui.JvOptionPaneTest.showInternalMessageDialogFamilyTest | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testVersionComparisonsjalview.util.LaunchUtilsTest.testVersionComparisons | 1PASS | ||
|
0.375
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_statusjalview.io.SequenceAnnotationReportTest.testAppendFeature_status | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testHideInsertionsjalview.gui.PopupMenuTest.testHideInsertions | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.375
|
jalview.util.matcher.ConditionTest.testFromStringjalview.util.matcher.ConditionTest.testFromString | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySet | 1PASS | ||
|
0.375
|
jalview.io.gff.Gff3HelperTest.testGetDescriptionjalview.io.gff.Gff3HelperTest.testGetDescription | 1PASS | ||
|
0.375
|
jalview.io.PhylipFileTests.testInterleavedDataExtractionjalview.io.PhylipFileTests.testInterleavedDataExtraction | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.gui.ProgressBarTest.testSetProgressBarjalview.gui.ProgressBarTest.testSetProgressBar | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProteinjalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProtein | 1PASS | ||
|
0.375
|
jalview.util.DBRefUtilsTest.testSearchRefs_accessionidjalview.util.DBRefUtilsTest.testSearchRefs_accessionid | 1PASS | ||
|
0.375
|
mc_view.PDBChainTest.testMakeCaBondList_nucleotidemc_view.PDBChainTest.testMakeCaBondList_nucleotide | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureAttributesTest.testGetDescriptionjalview.datamodel.features.FeatureAttributesTest.testGetDescription | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySet | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.fts.service.pdb.PDBFTSPanelTest.populateCmbSearchTargetOptionsTestjalview.fts.service.pdb.PDBFTSPanelTest.populateCmbSearchTargetOptionsTest | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblSeqProxyTest.testReverseComplementAllelesjalview.ext.ensembl.EnsemblSeqProxyTest.testReverseComplementAlleles | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testGetFeatureColourSchemejalview.ext.ensembl.EnsemblGeneTest.testGetFeatureColourScheme | 1PASS | ||
|
0.375
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_virtualFeaturejalview.io.SequenceAnnotationReportTest.testAppendFeature_virtualFeature | 1PASS | ||
|
0.375
|
jalview.io.gff.GffHelperFactoryTest.testGetHelperjalview.io.gff.GffHelperFactoryTest.testGetHelper | 1PASS | ||
|
0.375
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeatures | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkTableModelTest.testInitialisationjalview.urls.UrlLinkTableModelTest.testInitialisation | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testSetScrollValuesjalview.gui.AlignmentPanelTest.testSetScrollValues | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.getStatusForUrl_servicesReturned_statusIsOKjalview.ws2.client.slivka.SlivkaWSDiscovererTest.getStatusForUrl_servicesReturned_statusIsOK | 1PASS | ||
|
0.375
|
jalview.analysis.FinderTest.testFind_inDescriptionjalview.analysis.FinderTest.testFind_inDescription | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3 | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_reverseStrandjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_reverseStrand | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
jalview.math.RotatableMatrixTest.testGetRotationjalview.math.RotatableMatrixTest.testGetRotation | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testCancelWorkerjalview.workers.AlignCaclManager2Test.testCancelWorker | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblProteinTest.testIsValidReferencejalview.ext.ensembl.EnsemblProteinTest.testIsValidReference | 1PASS | ||
|
0.375
|
jalview.structure.StructureMappingTest.testGetPDBResNumRangesjalview.structure.StructureMappingTest.testGetPDBResNumRanges | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.bin.HiDPISettingTest2.testHiDPISettingsjalview.bin.HiDPISettingTest2.testHiDPISettings | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testBuildLinkMenujalview.gui.PopupMenuTest.testBuildLinkMenu | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_urlsPropertySet | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblXrefTest.testGetCrossReferencesjalview.ext.ensembl.EnsemblXrefTest.testGetCrossReferences | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependentjalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependent | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_matchingAnnotations | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequencejalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequence | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testCancelOneShotWorkerjalview.workers.AlignCaclManager2Test.testCancelOneShotWorker | 1PASS | ||
|
0.375
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations | 1PASS | ||
|
0.375
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.PfamFullTest.testGetURLjalview.ws.dbsources.PfamFullTest.testGetURL | 1PASS | ||
|
0.375
|
jalview.io.GenBankFileTest.testParsejalview.io.GenBankFileTest.testParse | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_mismatchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_mismatchingAnnotations | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
mc_view.PDBChainTest.testMakeExactMappingmc_view.PDBChainTest.testMakeExactMapping | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
|
0.375
|
jalview.util.ColorUtilsTest.testCreateColourFromNamejalview.util.ColorUtilsTest.testCreateColourFromName | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTermjalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTerm | 1PASS | ||
|
0.375
|
jalview.schemes.FeatureColourTest.testGetDescriptionjalview.schemes.FeatureColourTest.testGetDescription | 1PASS | ||
|
0.375
|
jalview.analysis.FinderTest.testFindAll_inSelectionjalview.analysis.FinderTest.testFindAll_inSelection | 1PASS | ||
|
0.375
|
jalview.gui.ProgressBarTest.testConstructor_prematureInstantiationjalview.gui.ProgressBarTest.testConstructor_prematureInstantiation | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkDisplayTest.getValuejalview.urls.UrlLinkDisplayTest.getValue | 1PASS | ||
|
0.375
|
jalview.util.FormatTest.testRepeatjalview.util.FormatTest.testRepeat | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.stockholmFileRnaSSSpaceCharsjalview.io.StockholmFileTest.stockholmFileRnaSSSpaceChars | 1PASS | ||
|
0.375
|
jalview.datamodel.MappedFeaturesTest.testFindProteinVariantsjalview.datamodel.MappedFeaturesTest.testFindProteinVariants | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumnsjalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumns | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testShadeCalculation_belowThresholdjalview.schemes.AnnotationColourGradientTest.testShadeCalculation_belowThreshold | 1PASS | ||
|
0.375
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_reverseToForwardjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_reverseToForward | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
mc_view.PDBChainTest.testMakeResidueList_withTempFactormc_view.PDBChainTest.testMakeResidueList_withTempFactor | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblCdnaTest.testGetIdentifyingFeatures | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
|
0.375
|
jalview.util.DBRefUtilsTest.testParseToDbRefjalview.util.DBRefUtilsTest.testParseToDbRef | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPaneljalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPanel | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodons | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.convertWildcardsToPathTestjalview.util.FileUtilsTest.convertWildcardsToPathTest | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.util.ColorUtilsTest.testGetAWTColorFromNamejalview.util.ColorUtilsTest.testGetAWTColorFromName | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testTransposejalview.math.SparseMatrixTest.testTranspose | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceFeatureTest.testGetStrandjalview.datamodel.SequenceFeatureTest.testGetStrand | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapColumnSelection_nulljalview.util.MappingUtilsTest.testMapColumnSelection_null | 1PASS | ||
|
0.375
|
jalview.schemes.ResiduePropertiesTest.testPhysicoChemicalPropertiesjalview.schemes.ResiduePropertiesTest.testPhysicoChemicalProperties | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkTableModelTest.testEditablejalview.urls.UrlLinkTableModelTest.testEditable | 1PASS | ||
|
0.375
|
jalview.io.AnnotationFileIOTest.testAnnotateAlignmentViewjalview.io.AnnotationFileIOTest.testAnnotateAlignmentView | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 1PASS | ||
|
0.375
|
jalview.io.TCoffeeScoreFileTest.testGetAsListjalview.io.TCoffeeScoreFileTest.testGetAsList | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.simpleGff3RelaxedIdMatchingjalview.io.FeaturesFileTest.simpleGff3RelaxedIdMatching | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourSchemejalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourScheme | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkDisplayTest.testIsEditablejalview.urls.UrlLinkDisplayTest.testIsEditable | 1PASS | ||
|
0.375
|
jalview.bin.CacheTest.testSetDatePropertyjalview.bin.CacheTest.testSetDateProperty | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.urls.IdentifiersUrlProviderTest.testDefaultUrljalview.urls.IdentifiersUrlProviderTest.testDefaultUrl | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMaximumScorejalview.analysis.scoremodels.ScoreMatrixTest.testGetMaximumScore | 1PASS | ||
|
0.375
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff | 1PASS | ||
|
0.375
|
jalview.urls.AppletUrlProviderFactoryTest.testCreateUrlProviderjalview.urls.AppletUrlProviderFactoryTest.testCreateUrlProvider | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.analysis.AlignSeqTest.testGlobalAlignmentjalview.analysis.AlignSeqTest.testGlobalAlignment | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
|
0.375
|
jalview.ws.rest.RestClientTest.testGetRestClientjalview.ws.rest.RestClientTest.testGetRestClient | 1PASS | ||
|
0.375
|
jalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbsjalview.ws.seqfetcher.DbRefFetcherTest.testStandardProtDbs | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolParserTest.testParse_alternativeResiduesjalview.ext.jmol.JmolParserTest.testParse_alternativeResidues | 1PASS | ||
|
0.375
|
jalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetModelStartNojalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetModelStartNo | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureAttributesTest.testGetMinMaxjalview.datamodel.features.FeatureAttributesTest.testGetMinMax | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq | 1PASS | ||
|
0.375
|
jalview.bin.HiDPISettingTest2.testHiDPISettingsjalview.bin.HiDPISettingTest2.testHiDPISettings | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdefjalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdef | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.testUpSeqsjalview.gui.structurechooser.StructureChooserQuerySourceTest.testUpSeqs | 1PASS | ||
|
0.375
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescriptionjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription | 1PASS | ||
|
0.375
|
jalview.bin.HiDPISettingTest2.testHiDPISettingsjalview.bin.HiDPISettingTest2.testHiDPISettings | 1PASS | ||
|
0.375
|
jalview.io.PhylipFileTests.testSequentialIOjalview.io.PhylipFileTests.testSequentialIO | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfilejalview.project.Jalview2xmlTests.testStoreAndRecoverHmmProfile | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeqjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInEitherOneSeq | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_null_propertyResetjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testSetUrls_null_propertyReset | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetMinimumScorejalview.analysis.scoremodels.ScoreMatrixTest.testGetMinimumScore | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceFeatureTest.testEqualsAndHashCodejalview.datamodel.SequenceFeatureTest.testEqualsAndHashCode | 1PASS | ||
|
0.375
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme | 1PASS | ||
|
0.375
|
jalview.gui.JvSwingUtilsTest.testGetScrollValueForProportionjalview.gui.JvSwingUtilsTest.testGetScrollValueForProportion | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testGetWorkersOfClassjalview.workers.AlignCaclManager2Test.testGetWorkersOfClass | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testPostMultiplyjalview.math.MatrixTest.testPostMultiply | 1PASS | ||
|
0.375
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
|
0.375
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypes_byOntologyjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypes_byOntology | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testSelectType_showForAlljalview.gui.AnnotationChooserTest.testSelectType_showForAll | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testGetSizejalview.analysis.scoremodels.ScoreMatrixTest.testGetSize | 1PASS | ||
|
0.375
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.headlessOrGuiImageOutputTestjalview.bin.CommandsTest.headlessOrGuiImageOutputTest | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testFindAlignedSequencejalview.datamodel.AlignedCodonFrameTest.testFindAlignedSequence | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testInstantQuitjalview.gui.QuitHandlerTest.testInstantQuit | 1PASS | ||
|
0.375
|
jalview.gui.CalculationChooserTest.testGetApplicableScoreModelsjalview.gui.CalculationChooserTest.testGetApplicableScoreModels | 1PASS | ||
|
0.375
|
jalview.io.AnnotationFileIOTest.testCalcIdRestorejalview.io.AnnotationFileIOTest.testCalcIdRestore | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScope | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testPreMultiply_tooManyColumnsjalview.math.MatrixTest.testPreMultiply_tooManyColumns | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testPreMultiplyjalview.math.MatrixTest.testPreMultiply | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testGetEditStatusMessage_lockedEditingjalview.gui.SeqPanelTest.testGetEditStatusMessage_lockedEditing | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testVersionComparisonsjalview.util.LaunchUtilsTest.testVersionComparisons | 1PASS | ||
|
0.375
|
jalview.analysis.AlignSeqTest.testIndexEncode_peptidejalview.analysis.AlignSeqTest.testIndexEncode_peptide | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testPostMultiplyjalview.math.SparseMatrixTest.testPostMultiply | 1PASS | ||
|
0.375
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_splicedjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_spliced | 1PASS | ||
|
0.375
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testIsIdentifiablejalview.io.FileFormatsTest.testIsIdentifiable | 1PASS | ||
|
0.375
|
jalview.schemes.ResiduePropertiesTest.testGetSingleCharacterCodejalview.schemes.ResiduePropertiesTest.testGetSingleCharacterCode | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testAddFeatureDetails_linkedFeaturesjalview.gui.PopupMenuTest.testAddFeatureDetails_linkedFeatures | 1PASS | ||
|
0.375
|
jalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefsjalview.ws.SequenceFetcherTest.testNoDuplicatesInFetchDbRefs | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.retrieveResult_verifySequencesAlignedjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.retrieveResult_verifySequencesAligned | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.RfamSeedTest.testGetURLjalview.ws.dbsources.RfamSeedTest.testGetURL | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_compareNullDisplayCharToBlankjalview.testutils.AnnotationsMatcherTest.testAnnotationsEqual_compareNullDisplayCharToBlank | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProteinjalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkTableModelTest.testValuesjalview.urls.UrlLinkTableModelTest.testValues | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testReverseRange_swapMinMaxjalview.math.MatrixTest.testReverseRange_swapMinMax | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequencejalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequence | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariantsjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariants | 1PASS | ||
|
0.375
|
jalview.io.TCoffeeScoreFileTest.testReadHeaderjalview.io.TCoffeeScoreFileTest.testReadHeader | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.375
|
jalview.gui.StructureViewerTest.testGetSequencesForPdbsjalview.gui.StructureViewerTest.testGetSequencesForPdbs | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreModelsTest.testConstructorjalview.analysis.scoremodels.ScoreModelsTest.testConstructor | 1PASS | ||
|
0.375
|
jalview.util.ImageMakerTest.testParseScaleWidthHeightStringsjalview.util.ImageMakerTest.testParseScaleWidthHeightStrings | 1PASS | ||
|
0.375
|
jalview.gui.AlignFrameTest.testColourThresholdActionsjalview.gui.AlignFrameTest.testColourThresholdActions | 1PASS | ||
|
0.375
|
jalview.bin.HiDPISettingTest1.testHiDPISettingInitjalview.bin.HiDPISettingTest1.testHiDPISettingInit | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignedCodonFrameTest.testRealiseWithjalview.datamodel.AlignedCodonFrameTest.testRealiseWith | 1PASS | ||
|
0.375
|
jalview.util.CaseInsensitiveStringTest.testHashcodejalview.util.CaseInsensitiveStringTest.testHashcode | 1PASS | ||
|
0.375
|
jalview.io.BSMLFileTest.testParse_BSMLjalview.io.BSMLFileTest.testParse_BSML | 1PASS | ||
|
0.375
|
jalview.math.RotatableMatrixTest.testPrintjalview.math.RotatableMatrixTest.testPrint | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.RfamFullTest.testGetURLjalview.ws.dbsources.RfamFullTest.testGetURL | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testHideRevealSequencesjalview.gui.AlignViewportTest.testHideRevealSequences | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGenomeTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblGenomeTest.testGetGenomicRangesFromFeatures | 1PASS | ||
|
0.375
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_nonejalview.renderer.ResidueColourFinderTest.testGetResidueColour_none | 1PASS | ||
|
0.375
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds | 1PASS | ||
|
0.375
|
jalview.structure.StructureSelectionManagerTest.testSaveAnnotationProviderjalview.structure.StructureSelectionManagerTest.testSaveAnnotationProvider | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.simpleGff3FileLoaderjalview.io.FeaturesFileTest.simpleGff3FileLoader | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotationsjalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotations | 1PASS | ||
|
0.375
|
jalview.analysis.TestAlignSeq.testGetMappingForS1_withLowerCasejalview.analysis.TestAlignSeq.testGetMappingForS1_withLowerCase | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testStartOneShotWorkerjalview.workers.AlignCaclManager2Test.testStartOneShotWorker | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testAddFeatureDetailsjalview.gui.PopupMenuTest.testAddFeatureDetails | 1PASS | ||
|
0.375
|
jalview.io.AnnotatedPDBFileInputTest.checkAnnotationWiringjalview.io.AnnotatedPDBFileInputTest.checkAnnotationWiring | 1PASS | ||
|
0.375
|
jalview.schemes.FeatureColourTest.testIsOutwithThresholdjalview.schemes.FeatureColourTest.testIsOutwithThreshold | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testEqualsjalview.math.MatrixTest.testEquals | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.analysis.TestAlignSeq.testGetMappingForS1_1jalview.analysis.TestAlignSeq.testGetMappingForS1_1 | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.testAnnotationEquivalencejalview.io.StockholmFileTest.testAnnotationEquivalence | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.375
|
jalview.gui.ScalePanelTest.testBuildPopupMenujalview.gui.ScalePanelTest.testBuildPopupMenu | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionTest.retrieveResult_verifySequencesAlignedjalview.ws2.actions.alignment.AlignmentActionTest.retrieveResult_verifySequencesAligned | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testComputePairwiseScoresjalview.analysis.scoremodels.ScoreMatrixTest.testComputePairwiseScores | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.SequenceFetcherTest.testQueryConversionsjalview.gui.SequenceFetcherTest.testQueryConversions | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.stringGetBaseAndExtensionTestjalview.util.FileUtilsTest.stringGetBaseAndExtensionTest | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedFeatureColourjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedFeatureColour | 1PASS | ||
|
0.375
|
jalview.analysis.DnaTest.testReverseCdnajalview.analysis.DnaTest.testReverseCdna | 1PASS | ||
|
0.375
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_peptidejalview.gui.ColourMenuHelperTest.testAddMenuItems_peptide | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testGetFormatsjalview.io.FileFormatsTest.testGetFormats | 1PASS | ||
|
0.375
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour | 1PASS | ||
|
0.375
|
jalview.gui.HelpTest.checkHelpTargetsjalview.gui.HelpTest.checkHelpTargets | 1PASS | ||
|
0.375
|
jalview.bin.CacheTest.testVersionCheckerjalview.bin.CacheTest.testVersionChecker | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withGapjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withGap | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGapsjalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgsjalview.gui.AlignmentPanelTest.testCalculateIdWidth_noArgs | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTest | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureTypeNotDisplayedjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureTypeNotDisplayed | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdnaTest.testRetainFeaturejalview.ext.ensembl.EnsemblCdnaTest.testRetainFeature | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForAlljalview.gui.AnnotationChooserTest.testSelectType_hideForAll | 1PASS | ||
|
0.375
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
|
0.375
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
|
0.375
|
mc_view.PDBChainTest.testMakeCaBondListmc_view.PDBChainTest.testMakeCaBondList | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testBuildShowHidePaneljalview.gui.AnnotationChooserTest.testBuildShowHidePanel | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.analysis.TestAlignSeq.testGetMappingForS1_2jalview.analysis.TestAlignSeq.testGetMappingForS1_2 | 1PASS | ||
|
0.375
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiHeaderRepeatedjalview.io.ScoreMatrixFileTest.testParseMatrix_ncbiHeaderRepeated | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblCdsTest.testRetainFeaturejalview.ext.ensembl.EnsemblCdsTest.testRetainFeature | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRowsjalview.gui.structurechooser.ThreeDBStructureChooserQuerySourceTest.testCollectSelectedRows | 1PASS | ||
|
0.375
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_colouredByAttributejalview.io.SequenceAnnotationReportTest.testAppendFeature_colouredByAttribute | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceFeatureTest.testGetValuejalview.datamodel.SequenceFeatureTest.testGetValue | 1PASS | ||
|
0.375
|
jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80jalview.io.ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80 | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_originalColoursjalview.schemes.AnnotationColourGradientTest.testFindColour_originalColours | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructurejalview.ws.dbsources.EBIAlphaFoldTest.checkImportPAEToStructure | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testOutputMatrix_roundTripjalview.analysis.scoremodels.ScoreMatrixTest.testOutputMatrix_roundTrip | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGapsjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps | 1PASS | ||
|
0.375
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureAttributesTest.testDatatypejalview.datamodel.features.FeatureAttributesTest.testDatatype | 1PASS | ||
|
0.375
|
jalview.io.JalviewFileChooserTest.checkDefaultSaveFormatjalview.io.JalviewFileChooserTest.checkDefaultSaveFormat | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testNoGUIUnsavedChangesjalview.gui.QuitHandlerTest.testNoGUIUnsavedChanges | 1PASS | ||
|
0.375
|
jalview.fts.threedbeacons.TDBeaconsPanelTest.populateCmbSearchTargetOptionsTestjalview.fts.threedbeacons.TDBeaconsPanelTest.populateCmbSearchTargetOptionsTest | 1PASS | ||
|
0.375
|
jalview.io.EmblFlatFileTest.testParse_noUniprotXrefjalview.io.EmblFlatFileTest.testParse_noUniprotXref | 1PASS | ||
|
0.375
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sequencesjalview.util.MappingUtilsTest.testMapSequenceGroup_sequences | 1PASS | ||
|
0.375
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_aboveThresholdjalview.schemes.AnnotationColourGradientTest.testFindColour_aboveThreshold | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.structures.models.AAStructureBindingModelTest.testBuildColoursMapjalview.structures.models.AAStructureBindingModelTest.testBuildColoursMap | 1PASS | ||
|
0.375
|
jalview.gui.DesktopTests.testInternalCopyPastejalview.gui.DesktopTests.testInternalCopyPaste | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
|
0.375
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay | 1PASS | ||
|
0.375
|
jalview.urls.UrlProviderTest.testSetDefaultUrlWronglyjalview.urls.UrlProviderTest.testSetDefaultUrlWrongly | 1PASS | ||
|
0.375
|
jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.testMockTDBRequestjalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.testMockTDBRequest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGeneTest.testRetainFeaturejalview.ext.ensembl.EnsemblGeneTest.testRetainFeature | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverviewjalview.gui.AlignmentPanelTest.testSetOverviewTitle_automaticOverview | 1PASS | ||
|
0.375
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testResetOriginalStatejalview.gui.AnnotationChooserTest.testResetOriginalState | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_columnsjalview.util.MappingUtilsTest.testMapSequenceGroup_columns | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForAlljalview.gui.AnnotationChooserTest.testDeselectType_showForAll | 1PASS | ||
|
0.375
|
jalview.io.JSONFileTest.testGrpParsedjalview.io.JSONFileTest.testGrpParsed | 1PASS | ||
|
0.375
|
jalview.schemes.FeatureColourTest.testGetColor_simpleColourjalview.schemes.FeatureColourTest.testGetColor_simpleColour | 1PASS | ||
|
0.375
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testBuildAnnotationTypesMenusjalview.gui.PopupMenuTest.testBuildAnnotationTypesMenus | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testPreMultiply_tooManyColumnsjalview.math.SparseMatrixTest.testPreMultiply_tooManyColumns | 1PASS | ||
|
0.375
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdefjalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdef | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns | 1PASS | ||
|
0.375
|
jalview.util.Log4jTest.testLog4jjalview.util.Log4jTest.testLog4j | 1PASS | ||
|
0.375
|
jalview.io.AnnotationExporterTest.testAnnotationExportAsCSVjalview.io.AnnotationExporterTest.testAnnotationExportAsCSV | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.375
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappojalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappo | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testPrintWrappedAlignmentjalview.gui.AlignmentPanelTest.testPrintWrappedAlignment | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_wordBoundariesjalview.analysis.ParsePropertiesTest.testGetScoresFromDescription_wordBoundaries | 1PASS | ||
|
0.375
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_nonejalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_none | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
|
0.375
|
jalview.controller.AlignViewControllerTest.testFindColumnsWithFeaturejalview.controller.AlignViewControllerTest.testFindColumnsWithFeature | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblGenomeTest.testRetainFeaturejalview.ext.ensembl.EnsemblGenomeTest.testRetainFeature | 1PASS | ||
|
0.375
|
jalview.structures.models.AAStructureBindingModelTest.testFindSuperposableResiduesjalview.structures.models.AAStructureBindingModelTest.testFindSuperposableResidues | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGapsjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.375
|
jalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsedjalview.ws2.client.slivka.SlivkaWSDiscovererTest.testGetUrls_urlsProperlyParsed | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroup | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testGetReadableFormatsjalview.io.FileFormatsTest.testGetReadableFormats | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureAttributesTest.testAttributeNameComparatorjalview.datamodel.features.FeatureAttributesTest.testAttributeNameComparator | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_hideForSelected | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView | 1PASS | ||
|
0.375
|
jalview.analysis.AlignmentUtilsTests.testMapCdsToProteinjalview.analysis.AlignmentUtilsTests.testMapCdsToProtein | 1PASS | ||
|
0.375
|
jalview.ext.pymol.PymolManagerTest.testGetPostRequestjalview.ext.pymol.PymolManagerTest.testGetPostRequest | 1PASS | ||
|
0.375
|
jalview.ext.ensembl.EnsemblProteinTest.testGetAccesionIdFromQueryjalview.ext.ensembl.EnsemblProteinTest.testGetAccesionIdFromQuery | 1PASS | ||
|
0.375
|
jalview.bin.HiDPISettingTest2.testHiDPISettingsjalview.bin.HiDPISettingTest2.testHiDPISettings | 1PASS | ||
|
0.375
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
|
0.375
|
jalview.util.DnaUtilsTest.testParseLocationjalview.util.DnaUtilsTest.testParseLocation | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testPreMultiply_tooFewColumnsjalview.math.SparseMatrixTest.testPreMultiply_tooFewColumns | 1PASS | ||
|
0.375
|
jalview.util.CaseInsensitiveStringTest.testEqualsjalview.util.CaseInsensitiveStringTest.testEquals | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.375
|
jalview.gui.AlignmentPanelTest.testSetOverviewTitlejalview.gui.AlignmentPanelTest.testSetOverviewTitle | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testPreMultiply_tooFewColumnsjalview.math.MatrixTest.testPreMultiply_tooFewColumns | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentAnnotationTests.testLiftOverjalview.datamodel.AlignmentAnnotationTests.testLiftOver | 1PASS | ||
|
0.375
|
jalview.urls.UrlProviderTest.testInitUrlProviderjalview.urls.UrlProviderTest.testInitUrlProvider | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.375
|
jalview.analysis.AlignmentUtilsTests.testGetSequencesByNamejalview.analysis.AlignmentUtilsTests.testGetSequencesByName | 1PASS | ||
|
0.375
|
jalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecoveryjalview.util.imagemaker.BitmapImageSizeTest.testCacheSettingsRecovery | 1PASS | ||
|
0.375
|
jalview.io.EmblFlatFileTest.testParseToRNAjalview.io.EmblFlatFileTest.testParseToRNA | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.UniprotTest.testimportOfProblemEntriesjalview.ws.dbsources.UniprotTest.testimportOfProblemEntries | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkDisplayTest.testUrljalview.urls.UrlLinkDisplayTest.testUrl | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sharedDatasetjalview.util.MappingUtilsTest.testMapSequenceGroup_sharedDataset | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testJavaFileGlobjalview.util.FileUtilsTest.testJavaFileGlob | 1PASS | ||
|
0.375
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.375
|
jalview.io.FileFormatsTest.testRegisterFileFormatjalview.io.FileFormatsTest.testRegisterFileFormat | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testGetEditStatusMessagejalview.gui.SeqPanelTest.testGetEditStatusMessage | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatricesjalview.gui.AlignViewportTest.testGetSelectionAsNewSequences_withContactMatrices | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
mc_view.PDBChainTest.testMakeResidueList_noAnnotationmc_view.PDBChainTest.testMakeResidueList_noAnnotation | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testReverseRange_maxToZerojalview.math.MatrixTest.testReverseRange_maxToZero | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequencejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_unselectedScope | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.urls.UrlLinkTableModelTest.testDeletablejalview.urls.UrlLinkTableModelTest.testDeletable | 1PASS | ||
|
0.375
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.getMatchingVersionedFilesTestjalview.util.FileUtilsTest.getMatchingVersionedFilesTest | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureMatcherSetTest.testMatches_byAttributejalview.datamodel.features.FeatureMatcherSetTest.testMatches_byAttribute | 1PASS | ||
|
0.375
|
jalview.io.FileLoaderTest.testUpdateRecentlyOpenedjalview.io.FileLoaderTest.testUpdateRecentlyOpened | 1PASS | ||
|
0.375
|
jalview.schemes.UserColourSchemeTest.testConstructor_coloursArrayjalview.schemes.UserColourSchemeTest.testConstructor_coloursArray | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testRestartDisabledWorkerjalview.workers.AlignCaclManager2Test.testRestartDisabledWorker | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testFindMinMax_timingjalview.math.MatrixTest.testFindMinMax_timing | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.schemes.HmmerGlobalBackgroundTest.testFindColourjalview.schemes.HmmerGlobalBackgroundTest.testFindColour | 1PASS | ||
|
0.375
|
jalview.util.FormatTest.testFormat_scientific_overflowjalview.util.FormatTest.testFormat_scientific_overflow | 1PASS | ||
|
0.375
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_withScoreStatusAttributejalview.io.SequenceAnnotationReportTest.testAppendFeature_withScoreStatusAttribute | 1PASS | ||
|
0.375
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForAlljalview.gui.AnnotationChooserTest.testDeselectType_hideForAll | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureMatcherSetTest.testMatches_compoundKeyjalview.datamodel.features.FeatureMatcherSetTest.testMatches_compoundKey | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testConstructorjalview.math.SparseMatrixTest.testConstructor | 1PASS | ||
|
0.375
|
jalview.gui.AppVarnaTest.testReplaceOddGapsjalview.gui.AppVarnaTest.testReplaceOddGaps | 1PASS | ||
|
0.375
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntologyjalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntology | 1PASS | ||
|
0.375
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO | 1PASS | ||
|
0.375
|
jalview.datamodel.features.FeatureMatcherSetTest.testOrjalview.datamodel.features.FeatureMatcherSetTest.testOr | 1PASS | ||
|
0.375
|
jalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTestjalview.gui.JvOptionPaneTest.showInternalConfirmDialogFamilyTest | 1PASS | ||
|
0.375
|
jalview.analysis.TestAlignSeq.testPrintAlignmentjalview.analysis.TestAlignSeq.testPrintAlignment | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTest | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat | 1PASS | ||
|
0.375
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels | 1PASS | ||
|
0.375
|
jalview.schemes.HmmerLocalBackgroundTest.testFindColourjalview.schemes.HmmerLocalBackgroundTest.testFindColour | 1PASS | ||
|
0.375
|
jalview.io.EmblFlatFileTest.testParsejalview.io.EmblFlatFileTest.testParse | 1PASS | ||
|
0.375
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.ws.dbsources.PfamSeedTest.testGetURLjalview.ws.dbsources.PfamSeedTest.testGetURL | 1PASS | ||
|
0.375
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations | 1PASS | ||
|
0.375
|
jalview.ext.pymol.PymolManagerTest.testGetPymolPathsjalview.ext.pymol.PymolManagerTest.testGetPymolPaths | 1PASS | ||
|
0.375
|
jalview.util.FileUtilsTest.testDirnamesAndBasenamesjalview.util.FileUtilsTest.testDirnamesAndBasenames | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.datamodel.AlignmentTest.testAlignAs_dnaAsDnajalview.datamodel.AlignmentTest.testAlignAs_dnaAsDna | 1PASS | ||
|
0.375
|
mc_view.PDBfileTest.testParse_withAnnotations_noSSmc_view.PDBfileTest.testParse_withAnnotations_noSS | 1PASS | ||
|
0.375
|
jalview.urls.UrlProviderTest.testSetDefaultUrljalview.urls.UrlProviderTest.testSetDefaultUrl | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGapsjalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps | 1PASS | ||
|
0.375
|
jalview.analysis.TestAlignSeq.testGetMappingForS1_complexjalview.analysis.TestAlignSeq.testGetMappingForS1_complex | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testJarVersionComparisonsjalview.util.LaunchUtilsTest.testJarVersionComparisons | 1PASS | ||
|
0.375
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReportjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport | 1PASS | ||
|
0.375
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToReversejalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToReverse | 1PASS | ||
|
0.375
|
jalview.io.cache.AppCacheTest.appCacheTestjalview.io.cache.AppCacheTest.appCacheTest | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotations | 1PASS | ||
|
0.375
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenujalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu | 1PASS | ||
|
0.375
|
jalview.workers.AlignCaclManager2Test.testStartRegisteredWorkerjalview.workers.AlignCaclManager2Test.testStartRegisteredWorker | 1PASS | ||
|
0.375
|
jalview.schemes.FeatureColourTest.testGetColor_GraduatedByAttributeValuejalview.schemes.FeatureColourTest.testGetColor_GraduatedByAttributeValue | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse | 1PASS | ||
|
0.375
|
jalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_verifySequenceNamesUniquifiedjalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_verifySequenceNamesUniquified | 1PASS | ||
|
0.375
|
jalview.util.LaunchUtilsTest.testGetdownVersionComparisonsjalview.util.LaunchUtilsTest.testGetdownVersionComparisons | 1PASS | ||
|
0.375
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
|
0.375
|
jalview.math.MatrixTest.testTred_reproduciblejalview.math.MatrixTest.testTred_reproducible | 1PASS | ||
|
0.375
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
|
0.375
|
jalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDnajalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDna | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchShortestSequencejalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchShortestSequence | 1PASS | ||
|
0.375
|
jalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetColourCommandjalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetColourCommand | 1PASS | ||
|
0.375
|
jalview.datamodel.SequenceTest.testCheckValidRangejalview.datamodel.SequenceTest.testCheckValidRange | 1PASS | ||
|
0.375
|
jalview.math.SparseMatrixTest.testTred_matchesMatrixjalview.math.SparseMatrixTest.testTred_matchesMatrix | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testEqualsAndHashCodejalview.analysis.scoremodels.ScoreMatrixTest.testEqualsAndHashCode | 1PASS | ||
|
0.375
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
|
0.375
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations | 1PASS | ||
|
0.375
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.375
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.375
|
jalview.analysis.AnnotationSorterTest.testSort_timingUnsortedjalview.analysis.AnnotationSorterTest.testSort_timingUnsorted | 1PASS | ||
|
0.375
|
jalview.util.FormatTest.testAppendPercentagejalview.util.FormatTest.testAppendPercentage | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testSymmetricjalview.analysis.scoremodels.ScoreMatrixTest.testSymmetric | 1PASS | ||
|
0.375
|
jalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchLongestSequencejalview.analysis.scoremodels.ScoreMatrixTest.testcomputeSimilarity_matchLongestSequence | 1PASS | ||
|
0.375
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToForwardjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToForward | 1PASS | ||
|
0.375
|
jalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotationsjalview.testutils.AnnotationsMatcherTest.testMatchesSafely_matchingAnnotations | 1PASS | ||
|
0.3125
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS |
| 1 | /* | ||||||
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
| 4 | * | ||||||
| 5 | * This file is part of Jalview. | ||||||
| 6 | * | ||||||
| 7 | * Jalview is free software: you can redistribute it and/or | ||||||
| 8 | * modify it under the terms of the GNU General Public License | ||||||
| 9 | * as published by the Free Software Foundation, either version 3 | ||||||
| 10 | * of the License, or (at your option) any later version. | ||||||
| 11 | * | ||||||
| 12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
| 15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
| 16 | * | ||||||
| 17 | * You should have received a copy of the GNU General Public License | ||||||
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
| 20 | */ | ||||||
| 21 | package jalview.bin; | ||||||
| 22 | |||||||
| 23 | import jalview.util.Platform; | ||||||
| 24 | |||||||
| 25 | import java.lang.reflect.Constructor; | ||||||
| 26 | import java.lang.reflect.InvocationTargetException; | ||||||
| 27 | import java.util.HashMap; | ||||||
| 28 | import java.util.Map; | ||||||
| 29 | |||||||
| 30 | /** | ||||||
| 31 | * A class to hold singleton objects, whose scope (context) is | ||||||
| 32 | * <ul> | ||||||
| 33 | * <li>the Java runtime (JVM) when running as Java</li> | ||||||
| 34 | * <li>one 'applet', when running as JalviewJS</li> | ||||||
| 35 | * </ul> | ||||||
| 36 | * This allows separation of multiple JS applets running on the same browser | ||||||
| 37 | * page, each with their own 'singleton' instances. | ||||||
| 38 | * <p> | ||||||
| 39 | * Instance objects are held in a separate Map (keyed by Class) for each | ||||||
| 40 | * context. For Java, this is just a single static Map. For SwingJS, the map is | ||||||
| 41 | * stored as a field {@code _swingjsSingletons} of | ||||||
| 42 | * {@code Thread.currentThread.getThreadGroup()}, as a proxy for the applet. | ||||||
| 43 | * <p> | ||||||
| 44 | * Note that when an applet is stopped, its ThreadGroup is removed, allowing any | ||||||
| 45 | * singleton references to be garbage collected. | ||||||
| 46 | * | ||||||
| 47 | * @author hansonr | ||||||
| 48 | */ | ||||||
|
|||||||
| 49 | public class ApplicationSingletonProvider | ||||||
| 50 | { | ||||||
| 51 | /** | ||||||
| 52 | * A tagging interface to mark classes whose singleton instances may be served | ||||||
| 53 | * by {@code ApplicationSingletonProvider}, giving a distinct instance per JS | ||||||
| 54 | * 'applet'. | ||||||
| 55 | * <p> | ||||||
| 56 | * A class whose singleton should have global scope (be shared across all | ||||||
| 57 | * applets on a page) should <em>not</em> use this mechanism, but just provide | ||||||
| 58 | * a single instance (class static member) in the normal way. | ||||||
| 59 | */ | ||||||
|
|||||||
| 60 | public interface ApplicationSingletonI | ||||||
| 61 | { | ||||||
| 62 | } | ||||||
| 63 | |||||||
| 64 | /* | ||||||
| 65 | * Map used to hold singletons in JVM context | ||||||
| 66 | */ | ||||||
| 67 | private static Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> singletons = new HashMap<>(); | ||||||
| 68 | |||||||
| 69 | /** | ||||||
| 70 | * private constructor for non-instantiable class | ||||||
| 71 | */ | ||||||
|
|||||||
| 72 | 0 | private ApplicationSingletonProvider()... |
|||||
| 73 | { | ||||||
| 74 | } | ||||||
| 75 | |||||||
| 76 | /** | ||||||
| 77 | * Returns the singletons map for the current context (JVM for Java, | ||||||
| 78 | * ThreadGroup for JS), creating the map on the first request for each JS | ||||||
| 79 | * ThreadGroup | ||||||
| 80 | * | ||||||
| 81 | * @return | ||||||
| 82 | */ | ||||||
|
|||||||
| 83 | 2344891 | private static Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> getContextMap()... |
|||||
| 84 | { | ||||||
| 85 | 2344894 | @SuppressWarnings("unused") | |||||
| 86 | 2344849 | ThreadGroup g = (Platform.isJS() | |||||
| 87 | ? Thread.currentThread().getThreadGroup() | ||||||
| 88 | : null); | ||||||
| 89 | 2344854 | Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> map = singletons; | |||||
| 90 | /** @j2sNative map = g._swingjsSingletons; */ | ||||||
| 91 | 2344862 | if (map == null) | |||||
| 92 | { | ||||||
| 93 | 0 | map = new HashMap<>(); | |||||
| 94 | /** @j2sNative g._swingjsSingletons = map; */ | ||||||
| 95 | } | ||||||
| 96 | |||||||
| 97 | 2344868 | return map; | |||||
| 98 | } | ||||||
| 99 | |||||||
| 100 | /** | ||||||
| 101 | * Answers the singleton instance of the given class for the current context | ||||||
| 102 | * (JVM or SwingJS 'applet'). If no instance yet exists, one is created, by | ||||||
| 103 | * calling the class's no-argument constructor. Answers null if any error | ||||||
| 104 | * occurs (or occurred previously for the same class). | ||||||
| 105 | * | ||||||
| 106 | * @param c | ||||||
| 107 | * @return | ||||||
| 108 | */ | ||||||
|
|||||||
| 109 | 2344212 | @SuppressWarnings("unchecked")... |
|||||
| 110 | public static <T extends ApplicationSingletonI> T getInstance(Class<T> c) | ||||||
| 111 | { | ||||||
| 112 | 2344223 | Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> map = getContextMap(); | |||||
| 113 | 2344223 | if (map.containsKey(c)) | |||||
| 114 | { | ||||||
| 115 | /* | ||||||
| 116 | * singleton already created _or_ creation failed (null value stored) | ||||||
| 117 | */ | ||||||
| 118 | 2343559 | return (T) map.get(c); | |||||
| 119 | } | ||||||
| 120 | |||||||
| 121 | /* | ||||||
| 122 | * create and save the singleton | ||||||
| 123 | */ | ||||||
| 124 | 647 | T o = null; | |||||
| 125 | 647 | try | |||||
| 126 | { | ||||||
| 127 | 647 | Constructor<T> con = c.getDeclaredConstructor(); | |||||
| 128 | 647 | con.setAccessible(true); | |||||
| 129 | 647 | o = con.newInstance(); | |||||
| 130 | } catch (IllegalAccessException | InstantiationException | ||||||
| 131 | | IllegalArgumentException | InvocationTargetException | ||||||
| 132 | | NoSuchMethodException | SecurityException e) | ||||||
| 133 | { | ||||||
| 134 | 0 | Console.error("Failed to create singleton for " + c.toString() | |||||
| 135 | + ", error was: " + e.toString()); | ||||||
| 136 | 0 | e.printStackTrace(); | |||||
| 137 | } | ||||||
| 138 | |||||||
| 139 | /* | ||||||
| 140 | * store the new singleton; note that a | ||||||
| 141 | * null value is saved if construction failed | ||||||
| 142 | */ | ||||||
| 143 | 646 | getContextMap().put(c, o); | |||||
| 144 | 646 | return o; | |||||
| 145 | } | ||||||
| 146 | |||||||
| 147 | /** | ||||||
| 148 | * Removes the current singleton instance of the given class from the current | ||||||
| 149 | * application context. This has the effect of ensuring that a new instance is | ||||||
| 150 | * created the next time one is requested. | ||||||
| 151 | * | ||||||
| 152 | * @param c | ||||||
| 153 | */ | ||||||
|
|||||||
| 154 | 20 | public static void removeInstance(... |
|||||
| 155 | Class<? extends ApplicationSingletonI> c) | ||||||
| 156 | { | ||||||
| 157 | 20 | Map<Class<? extends ApplicationSingletonI>, ApplicationSingletonI> map = getContextMap(); | |||||
| 158 | 20 | if (map != null) | |||||
| 159 | { | ||||||
| 160 | 20 | map.remove(c); | |||||
| 161 | } | ||||||
| 162 | } | ||||||
| 163 | } |
