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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
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1.0100%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
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0.8571428785.7%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
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0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.785234978.5%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.771428677.1%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.7187571.9%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
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0.7028985670.3%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.695652269.6%
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jalview.gui.AssociatePdbFileWithSeq
jalview.gui.AssociatePdbFileWithSeq
|
0.6562565.6%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
|
0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
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0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.6190476461.9%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.572916757.3%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
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0.553191555.3%
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mc_view.PDBChain
mc_view.PDBChain
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0.5291005452.9%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.523255852.3%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5061224750.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.504807750.5%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
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0.49870849.9%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.485714348.6%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.4519230745.2%
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jalview.datamodel.StartRegionIterator
jalview.datamodel.StartRegionIterator
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0.4444444544.4%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
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0.4444444544.4%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
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0.4242424442.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.423469442.3%
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org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.Consensus
jalview.schemes.Consensus
|
0.393939439.4%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.3921568739.2%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.3920265739.2%
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jalview.io.StructureFile
jalview.io.StructureFile
|
0.390697739.1%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.datamodel.Range
jalview.datamodel.Range
|
0.388888938.9%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.3643724636.4%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.349056634.9%
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jalview.util.Format
jalview.util.Format
|
0.345755734.6%
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jalview.util.Comparison
jalview.util.Comparison
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0.3267716532.7%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3184713431.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.3056603730.6%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3055555530.6%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2987447729.9%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2909090829.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.2907385829.1%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.2852564228.5%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
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mc_view.Atom
mc_view.Atom
|
0.282051328.2%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.2692307826.9%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2658610326.6%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.2653061226.5%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.261589426.2%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.250909125.1%
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org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.2525%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.2525%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.2525%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.2470588224.7%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.2391857523.9%
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.2291483722.9%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2206896522.1%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.2133333421.3%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2083333320.8%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.2073170720.7%
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jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.2070707120.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2042253520.4%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2014388420.1%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.220%
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jalview.io.AlignFile
jalview.io.AlignFile
|
0.1959459519.6%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
|
0.1956521719.6%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.190476219%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1842105218.4%
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jalview.io.FileParse
jalview.io.FileParse
|
0.180055418%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.1666666716.7%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1643700716.4%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.1639344216.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.1458333314.6%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1458333314.6%
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jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
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jalview.bin.Console
jalview.bin.Console
|
0.1415094314.2%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.14062514.1%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.1362196413.6%
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org.json.JSONObject
org.json.JSONObject
|
0.1322549913.2%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.1232876712.3%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.1190476211.9%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.1132075511.3%
|
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jalview.util.MapList
jalview.util.MapList
|
0.108810.9%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
|
0.1010638310.1%
|
|
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
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jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
|
0.098591559.9%
|
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jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
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|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.09523819.5%
|
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.093220349.3%
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jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
|
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
|
0.08620698.6%
|
|
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.07475417.5%
|
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.0714285757.1%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.06721826.7%
|
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.0657276966.6%
|
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|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.06256.2%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0576131685.8%
|
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|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.0466321264.7%
|
|
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0463871554.6%
|
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.0444444464.4%
|
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.039135883.9%
|
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jalview.bin.Cache
jalview.bin.Cache
|
0.037940383.8%
|
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.0294736852.9%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.0289156622.9%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0254041572.5%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0186915881.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.018264841.8%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0123762381.2%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0088924820.9%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0083612040.8%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00687285230.7%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0040485830.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
