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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
|
1.0100%
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jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.869565287%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
|
0.8571428785.7%
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jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
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0.810810881.1%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
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0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.785234978.5%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.7812578.1%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.77577.5%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.771428677.1%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.735849173.6%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
|
0.7028985670.3%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.672131167.2%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
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0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
|
0.655172465.5%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.6190476461.9%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.595238159.5%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.gui.AnnotationColumnChooser.FurtherActionPanel
jalview.gui.AnnotationColumnChooser.FurtherActionPanel
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0.586206958.6%
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jalview.gui.AnnotationColumnChooser
jalview.gui.AnnotationColumnChooser
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0.581227458.1%
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jalview.gui.Slider
jalview.gui.Slider
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0.565217456.5%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
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0.553191555.3%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.5061224750.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.504807750.5%
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jalview.gui.AnnotationColumnChooser.SearchPanel
jalview.gui.AnnotationColumnChooser.SearchPanel
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0.4745762647.5%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4671052746.7%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
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0.4444444544.4%
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jalview.io.cache.AppCache
jalview.io.cache.AppCache
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0.439024443.9%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
|
0.4242424442.4%
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org.json.JSONTokener
org.json.JSONTokener
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0.4132841241.3%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.398671139.9%
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jalview.schemes.Consensus
jalview.schemes.Consensus
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0.393939439.4%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.3921568739.2%
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jalview.datamodel.Range
jalview.datamodel.Range
|
0.388888938.9%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.3815789538.2%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3658536736.6%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.3655172336.6%
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jalview.viewmodel.annotationfilter.AnnotationFilterParameter
jalview.viewmodel.annotationfilter.AnnotationFilterParameter
|
0.3571428735.7%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.3544973435.4%
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jalview.gui.AnnotationRowFilter
jalview.gui.AnnotationRowFilter
|
0.352422935.2%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.341059634.1%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.io.cache.JvCacheableInputBox
jalview.io.cache.JvCacheableInputBox
|
0.3118279631.2%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.3056603730.6%
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jalview.gui.AnnotationColumnChooser.StructureFilterPanel
jalview.gui.AnnotationColumnChooser.StructureFilterPanel
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0.2898550629%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2887438828.9%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.285714328.6%
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org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.2525%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.2378048723.8%
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jalview.ws.WSClient
jalview.ws.WSClient
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0.2352941223.5%
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jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.2311320823.1%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.2291483722.9%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.2169811321.7%
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jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.2105263221.1%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.2056074720.6%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
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0.1956521719.6%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.1942977819.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.1921568719.2%
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jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.187518.8%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.1842105218.4%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.1811594218.1%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1673228316.7%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
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0.1666666716.7%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.1666666716.7%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.1598326416%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1562515.6%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1528662415.3%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.1512027515.1%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.1466666614.7%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.1436065614.4%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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org.json.JSONObject
org.json.JSONObject
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0.1322549913.2%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.1232876712.3%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.1190476211.9%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1075491210.8%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
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0.1010638310.1%
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jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
|
0.098591559.9%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.093220349.3%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.090395489%
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jalview.bin.Console
jalview.bin.Console
|
0.089622649%
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
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jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
|
0.08620698.6%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.0833333368.3%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.0657276966.6%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0633363056.3%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.06256.2%
|
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.util.Comparison
jalview.util.Comparison
|
0.055118115.5%
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jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0497237565%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0484988474.8%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.045317224.5%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.0445783144.5%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.0444444464.4%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0433604344.3%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.0423634354.2%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.044%
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jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0370370373.7%
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jalview.util.Platform
jalview.util.Platform
|
0.0346534663.5%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.0294736852.9%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0288461542.9%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.028776982.9%
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0272904492.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0267175572.7%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0247338772.5%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0203012452%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0187573271.9%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.018264841.8%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0080971660.8%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0056588520.6%
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