Clover icon

Coverage Report

Test testAutoShowOverviewForLegacyProjects

Test
testAutoShowOverviewForLegacyProjects 1PASS 4 Dec 16:15:46 13.98
 
testAutoShowOverviewForLegacyProjects
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.ws.params.ParamDatastoreI   jalview.ws.params.ParamDatastoreI 1.0100%
jalview.project.Jalview2XML.JvAnnotRow   jalview.project.Jalview2XML.JvAnnotRow 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 1.0100%
jalview.gui.ProgressPanel   jalview.gui.ProgressPanel 0.975609897.6%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.941176594.1%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.869565287%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.866666786.7%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.858695685.9%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
mc_view.Residue   mc_view.Residue 0.8461538684.6%
jalview.datamodel.VisibleRowsCollection   jalview.datamodel.VisibleRowsCollection 0.833333383.3%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.833333383.3%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.880%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.880%
jalview.datamodel.VisibleColsCollection   jalview.datamodel.VisibleColsCollection 0.880%
jalview.renderer.OverviewResColourFinder   jalview.renderer.OverviewResColourFinder 0.783783878.4%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread 0.75471775.5%
jalview.workers.AlignCalcManager2.WorkerManager   jalview.workers.AlignCalcManager2.WorkerManager 0.7575%
jalview.viewmodel.OverviewDimensions   jalview.viewmodel.OverviewDimensions 0.7464788674.6%
jalview.xml.binding.jalview.SequenceSet   jalview.xml.binding.jalview.SequenceSet 0.736842173.7%
jalview.datamodel.RangeElementsIterator   jalview.datamodel.RangeElementsIterator 0.7187571.9%
jalview.workers.AlignCalcManager2.SimpleWorkerManager   jalview.workers.AlignCalcManager2.SimpleWorkerManager 0.7142857371.4%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings 0.7142857371.4%
jalview.jbgui.GStructureViewer   jalview.jbgui.GStructureViewer 0.7065217570.7%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.70491870.5%
jalview.datamodel.VisibleRowsIterator   jalview.datamodel.VisibleRowsIterator 0.770%
jalview.renderer.OverviewRenderer   jalview.renderer.OverviewRenderer 0.6746987767.5%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.666666766.7%
jalview.ws.api.UIinfo   jalview.ws.api.UIinfo 0.6470588464.7%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.6470588464.7%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.6285714562.9%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.62562.5%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.62562.5%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter 0.62562.5%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.6162790761.6%
jalview.analysis.SequenceIdMatcher.SeqIdName   jalview.analysis.SequenceIdMatcher.SeqIdName 0.605263260.5%
jalview.xml.binding.jalview.JalviewModel   jalview.xml.binding.jalview.JalviewModel 0.5961538659.6%
jalview.util.ParseHtmlBodyAndLinks   jalview.util.ParseHtmlBodyAndLinks 0.594202959.4%
jalview.jbgui.GTreePanel   jalview.jbgui.GTreePanel 0.5789473757.9%
jalview.xml.binding.jalview.JalviewModel.JSeq   jalview.xml.binding.jalview.JalviewModel.JSeq 0.576923157.7%
jalview.ws.jws2.PreferredServiceRegistry   jalview.ws.jws2.PreferredServiceRegistry 0.571428657.1%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.571428657.1%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.567556.7%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.565217456.5%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.gui.TreePanel.TreeLoader   jalview.gui.TreePanel.TreeLoader 0.553191555.3%
jalview.ws2.gui.WebServicesMenuManager   jalview.ws2.gui.WebServicesMenuManager 0.5428571754.3%
mc_view.PDBChain   mc_view.PDBChain 0.5396825754%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.533898353.4%
jalview.gui.OverviewCanvas   jalview.gui.OverviewCanvas 0.525862152.6%
jalview.util.MessageManager   jalview.util.MessageManager 0.5238095552.4%
com.stevesoft.pat.Boundary   com.stevesoft.pat.Boundary 0.518518551.9%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser 0.514211951.4%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.xml.binding.jalview.AnnotationElement   jalview.xml.binding.jalview.AnnotationElement 0.550%
jalview.xml.binding.jalview.SequenceType   jalview.xml.binding.jalview.SequenceType 0.550%
jalview.xml.binding.jalview.JalviewModel.JGroup   jalview.xml.binding.jalview.JalviewModel.JGroup 0.550%
jalview.xml.binding.jalview.Sequence   jalview.xml.binding.jalview.Sequence 0.550%
mc_view.Bond   mc_view.Bond 0.550%
jalview.structures.models.SequenceStructureBindingModel   jalview.structures.models.SequenceStructureBindingModel 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.490384649%
jalview.xml.binding.jalview.Annotation   jalview.xml.binding.jalview.Annotation 0.4824561548.2%
jalview.xml.binding.jalview.JalviewModel.Viewport   jalview.xml.binding.jalview.JalviewModel.Viewport 0.4806451548.1%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.4772727247.7%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4671052746.7%
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup   jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup 0.4579439245.8%
jalview.datamodel.BinaryNode   jalview.datamodel.BinaryNode 0.4545454745.5%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.453703745.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.4336734743.4%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.io.StructureFile   jalview.io.StructureFile 0.4186046441.9%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.415704441.6%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.4133333341.3%
jalview.analysis.SequenceIdMatcher   jalview.analysis.SequenceIdMatcher 0.412280741.2%
jalview.gui.OverviewPanel   jalview.gui.OverviewPanel 0.411764741.2%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.ws2.actions.BaseAction   jalview.ws2.actions.BaseAction 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.util.Comparison   jalview.util.Comparison 0.3976377839.8%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.388888938.9%
jalview.bin.ApplicationSingletonProvider   jalview.bin.ApplicationSingletonProvider 0.37537.5%
jalview.datamodel.StructureViewerModel.StructureData   jalview.datamodel.StructureViewerModel.StructureData 0.37537.5%
jalview.io.NewickFile   jalview.io.NewickFile 0.3709016437.1%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.3698360637%
jalview.util.Format   jalview.util.Format 0.3685300436.9%
jalview.analysis.TreeModel   jalview.analysis.TreeModel 0.3682170536.8%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3588850235.9%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.356275335.6%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.3541666635.4%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.3489208534.9%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.3458401334.6%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.3423212234.2%
jalview.workers.AlignCalcManager2   jalview.workers.AlignCalcManager2 0.3356164433.6%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.3353658633.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.3333333433.3%
jalview.xml.binding.jalview.VAMSAS   jalview.xml.binding.jalview.VAMSAS 0.3333333433.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.331210233.1%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.3310344833.1%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.328405532.8%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3278145832.8%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.3221649532.2%
jalview.datamodel.StructureViewerModel   jalview.datamodel.StructureViewerModel 0.3232%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.316066731.6%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.3155216331.6%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.313725531.4%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.312531.2%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.309090930.9%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.3076923230.8%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.302631630.3%
jalview.ws2.api.WebService   jalview.ws2.api.WebService 0.330%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.299581630%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.294871829.5%
jalview.io.FileLoader   jalview.io.FileLoader 0.2926829229.3%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.2909090829.1%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder 0.282051328.2%
mc_view.Atom   mc_view.Atom 0.282051328.2%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.2707355327.1%
jalview.gui.AppJmol.RenderPanel   jalview.gui.AppJmol.RenderPanel 0.2702702627%
jalview.xml.binding.jalview.JalviewModel.Tree   jalview.xml.binding.jalview.JalviewModel.Tree 0.2692307826.9%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.26910326.9%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2654867226.5%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.2608695626.1%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2567975825.7%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.ws.api.ServiceWithParameters   jalview.ws.api.ServiceWithParameters 0.2525%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.2525%
jalview.ws.jws2.Jws2ClientFactory   jalview.ws.jws2.Jws2ClientFactory 0.24824.8%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.io.FileParse   jalview.io.FileParse 0.2409972324.1%
jalview.io.FileFormats   jalview.io.FileFormats 0.2424%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2424%
jalview.gui.AppJmol   jalview.gui.AppJmol 0.2379182123.8%
jalview.ws.WSClient   jalview.ws.WSClient 0.2352941223.5%
jalview.datamodel.VisibleContigsIterator   jalview.datamodel.VisibleContigsIterator 0.2340425623.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.datamodel.SequenceNode   jalview.datamodel.SequenceNode 0.2307692323.1%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.2274509822.7%
jalview.structure.StructureMapping   jalview.structure.StructureMapping 0.2176165721.8%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.viewmodel.OverviewDimensionsHideHidden   jalview.viewmodel.OverviewDimensionsHideHidden 0.2054794620.5%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.2042253520.4%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.220%
jalview.structure.StructureCommand   jalview.structure.StructureCommand 0.220%
jalview.project.Jalview2XML   jalview.project.Jalview2XML 0.1980511519.8%
jalview.io.AlignFile   jalview.io.AlignFile 0.1959459519.6%
jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings 0.190476219%
jalview.util.QuickSort   jalview.util.QuickSort 0.1877022718.8%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.187518.8%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.183764518.4%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1803278618%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.1801619418%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.1794871817.9%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.1751968617.5%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.1695702717%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.1686746916.9%
jalview.log.JLogger   jalview.log.JLogger 0.1648351716.5%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.1642651316.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.1598639516%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.159420315.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.1581920815.8%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.151315815.1%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.149532715%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.1466666614.7%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1445312514.5%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.1333333413.3%
jalview.schemes.HmmerGlobalBackground   jalview.schemes.HmmerGlobalBackground 0.1333333413.3%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.1333333413.3%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.1282316412.8%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.1270718312.7%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1246086412.5%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.util.MapList   jalview.util.MapList 0.121612.2%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.1183261211.8%
jalview.bin.Console   jalview.bin.Console 0.1132075511.3%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1111111111.1%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.1095890411%
jalview.gui.TreePanel   jalview.gui.TreePanel 0.10894941510.9%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.10679611610.7%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.10389610410.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.1028806610.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.gui.Desktop   jalview.gui.Desktop 0.099219629.9%
jalview.util.Platform   jalview.util.Platform 0.0965346549.7%
jalview.ws2.client.jpred4.JPred4WSDiscoverer   jalview.ws2.client.jpred4.JPred4WSDiscoverer 0.09523819.5%
jalview.ws2.client.api.AbstractWebServiceDiscoverer   jalview.ws2.client.api.AbstractWebServiceDiscoverer 0.0943396249.4%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.090526319.1%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0848484868.5%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.081632658.2%
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer   jalview.ws2.client.ebi.JobDispatcherWSDiscoverer 0.081632658.2%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.081081088.1%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.076923087.7%
jalview.schemes.HmmerLocalBackground   jalview.schemes.HmmerLocalBackground 0.076923087.7%
jalview.schemes.HmmerColourScheme   jalview.schemes.HmmerColourScheme 0.076923087.7%
jalview.analysis.AlignmentAnnotationUtils   jalview.analysis.AlignmentAnnotationUtils 0.0762711847.6%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.068965526.9%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.06474826.5%
jalview.schemes.HMMMatchScoreColourScheme   jalview.schemes.HMMMatchScoreColourScheme 0.063829796.4%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063655036.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.0616438356.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder 0.0576923085.8%
jalview.bin.Cache   jalview.bin.Cache 0.056910575.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0560747655.6%
jalview.workers.InformationThread   jalview.workers.InformationThread 0.0555555565.6%
jalview.io.FileFormat   jalview.io.FileFormat 0.0551724145.5%
jalview.ws2.params.SimpleParamDatastore   jalview.ws2.params.SimpleParamDatastore 0.055%
jalview.gui.TreeCanvas   jalview.gui.TreeCanvas 0.0498046885%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.04952835%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount 0.0468754.7%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.04566214.6%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.044642864.5%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.043478264.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.0416666684.2%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.0352564123.5%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.ext.jmol.JmolCommands   jalview.ext.jmol.JmolCommands 0.0275590552.8%
jalview.ws2.client.slivka.SlivkaWSDiscoverer   jalview.ws2.client.slivka.SlivkaWSDiscoverer 0.0268456382.7%
jalview.util.FileUtils   jalview.util.FileUtils 0.0267857152.7%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0254237282.5%
jalview.gui.StructureViewer   jalview.gui.StructureViewer 0.0232558142.3%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0170268511.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.015325671.5%
mc_view.PDBfile   mc_view.PDBfile 0.0150375941.5%
jalview.hmmer.HmmerCommand   jalview.hmmer.HmmerCommand 0.0141509441.4%
jalview.bin.Jalview   jalview.bin.Jalview 0.01374292651.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0135593221.4%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0129954521.3%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0128205131.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0112359551.1%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.0103092781%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.010101011%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.00103039670.1%