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jalview.ws2.actions.hmmer.PhmmerAction.Builder
jalview.ws2.actions.hmmer.PhmmerAction.Builder
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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1.0100%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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1.0100%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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1.0100%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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1.0100%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.866666786.7%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.schemes.ScoreColourScheme
jalview.schemes.ScoreColourScheme
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0.7575%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.735849173.6%
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jalview.jbgui.GSliderPanel
jalview.jbgui.GSliderPanel
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0.7323943473.2%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.695652269.6%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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0.687568.8%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.6428571364.3%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.6190476461.9%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.660%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
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0.583333358.3%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.579268357.9%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.5737704657.4%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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jalview.gui.SliderPanel
jalview.gui.SliderPanel
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0.554263655.4%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4711538647.1%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.464285746.4%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.46446.4%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.4519230745.2%
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jalview.ws2.actions.secstructpred.SecStructPredAction
jalview.ws2.actions.secstructpred.SecStructPredAction
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0.4285714342.9%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4152542441.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.404761940.5%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.util.UrlLink
jalview.util.UrlLink
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0.3977272839.8%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.3959183739.6%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.352941235.3%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.346938834.7%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.3396226534%
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jalview.gui.PopupMenu
jalview.gui.PopupMenu
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0.331541233.2%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.ws2.actions.hmmer.PhmmerAction
jalview.ws2.actions.hmmer.PhmmerAction
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0.2941176629.4%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2828947328.3%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.2613240526.1%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.253623225.4%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.2465753424.7%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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0.2380952423.8%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.2325581523.3%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.2187521.9%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.2151009621.5%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2120717821.2%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2083333320.8%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.220%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.1842105218.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.1803921618%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.1794871817.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.1750819717.5%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.1739130517.4%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.168016216.8%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1643700716.4%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.1554216915.5%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.1458333314.6%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
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0.144067814.4%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1379310313.8%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
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0.1333333413.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.132812513.3%
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jalview.ws2.client.jpred4.JPred4WSClient
jalview.ws2.client.jpred4.JPred4WSClient
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0.1290322512.9%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.1003167910%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.09523819.5%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.bin.Console
jalview.bin.Console
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0.089622649%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.080661848.1%
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
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0.079207927.9%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
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0.076923087.7%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.073717957.4%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.0714285757.1%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.063694276.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.0579839425.8%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
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0.0569620245.7%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0551724145.5%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.0543933065.4%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.0497237565%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.047937574.8%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.0444444464.4%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
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0.042553194.3%
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jalview.util.Platform
jalview.util.Platform
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0.0420792074.2%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.0408163264.1%
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jalview.util.Comparison
jalview.util.Comparison
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0.039370083.9%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
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0.038461543.8%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
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0.0366972463.7%
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jalview.bin.Cache
jalview.bin.Cache
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0.0311653113.1%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0306603783.1%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.0264900662.6%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.026299312.6%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.0257913252.6%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0241730292.4%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.0230946882.3%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0208333342.1%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0203012452%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0186915881.9%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.018264841.8%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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0.0154440151.5%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.015325671.5%
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jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
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0.0102040811%
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jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
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0.0101522841%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.008968610.9%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0072756670.7%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.0069686410.7%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00687285230.7%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.0050505050.5%
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jalview.gui.Preferences
jalview.gui.Preferences
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0.004866180.5%
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