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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
1.0100%
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jalview.json.binding.biojson.v1.SequenceGrpPojo
jalview.json.binding.biojson.v1.SequenceGrpPojo
|
0.9595%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
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jalview.json.binding.biojson.v1.SequenceFeaturesPojo
jalview.json.binding.biojson.v1.SequenceFeaturesPojo
|
0.930232693%
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jalview.json.binding.biojson.v1.SequencePojo
jalview.json.binding.biojson.v1.SequencePojo
|
0.818181881.8%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
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jalview.json.binding.biojson.v1.AlignmentPojo
jalview.json.binding.biojson.v1.AlignmentPojo
|
0.724137972.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.666666766.7%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.567556.7%
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.5111111451.1%
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jalview.io.JSONFile
jalview.io.JSONFile
|
0.503253850.3%
|
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
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jalview.datamodel.AlignExportSettingsAdapter
jalview.datamodel.AlignExportSettingsAdapter
|
0.4615384646.2%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.4012738840.1%
|
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3571428735.7%
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jalview.io.AlignFile
jalview.io.AlignFile
|
0.344594634.5%
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jalview.util.Comparison
jalview.util.Comparison
|
0.3346456633.5%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.3214285732.1%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.3193069431.9%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.315217431.5%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.313725531.4%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.276150627.6%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.274826827.5%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2628398826.3%
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org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
|
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.2439024424.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.21858521.9%
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org.json.JSONObject
org.json.JSONObject
|
0.2131303521.3%
|
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.2131147521.3%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2032786920.3%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.220%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.220%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1944444519.4%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1847133818.5%
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jalview.io.FileParse
jalview.io.FileParse
|
0.1828254918.3%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.18270818.3%
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jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.1818181918.2%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.172413817.2%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.1712328817.1%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1561106115.6%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1490066214.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.1337349413.4%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
|
0.1333333413.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.132812513.3%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.1258992912.6%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.12512.5%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1149068311.5%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.097560979.8%
|
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0965517249.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.088888898.9%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.072368427.2%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.0714285757.1%
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org.json.JSONArray
org.json.JSONArray
|
0.070921997.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.070757677.1%
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jalview.bin.Console
jalview.bin.Console
|
0.0707547147.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.070339987%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.068965526.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
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jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
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jalview.json.binding.biojson.v1.ColourSchemeMapper
jalview.json.binding.biojson.v1.ColourSchemeMapper
|
0.064516136.5%
|
|
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063655036.4%
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jalview.util.Platform
jalview.util.Platform
|
0.061881196.2%
|
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.0512820525.1%
|
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.042553194.3%
|
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.042399174.2%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.038461543.8%
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jalview.bin.Cache
jalview.bin.Cache
|
0.037940383.8%
|
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org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.0367346933.7%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
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jalview.util.Format
jalview.util.Format
|
0.0289855082.9%
|
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.0267857152.7%
|
|
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0267175572.7%
|
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.0252.5%
|
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0238095242.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0235294122.4%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.023474182.3%
|
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0232558142.3%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0193370171.9%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.0188679251.9%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0188679251.9%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0188679251.9%
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jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0185185191.9%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0170268511.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
|
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
|
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|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0129954521.3%
|
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0128205131.3%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0105092961.1%
|
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.009842521%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0080971660.8%
|
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org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.006131550.6%
|
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00351185260.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
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