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jalview.ws2.actions.hmmer.PhmmerAction.Builder
jalview.ws2.actions.hmmer.PhmmerAction.Builder
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1.0100%
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jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
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1.0100%
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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
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1.0100%
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jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
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1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder
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jalview.structures.models.AAStructureBindingModel.SuperposeData
jalview.structures.models.AAStructureBindingModel.SuperposeData
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.structure.StructureImportSettings.TFType
jalview.structure.StructureImportSettings.TFType
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1.0100%
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jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.structure.AtomSpecModel
jalview.structure.AtomSpecModel
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0.8809523688.1%
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jalview.bin.argparser.StructuresFile
jalview.bin.argparser.StructuresFile
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0.876404587.6%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
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0.8571428785.7%
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jalview.gui.StructureViewer.ViewerType
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0.8571428785.7%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
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0.85234985.2%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.880%
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jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
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0.880%
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jalview.ws2.api.WebService
jalview.ws2.api.WebService
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0.880%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.workers.SecondaryStructureConsensusThread
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0.75471775.5%
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jalview.workers.AlignCalcManager2.WorkerManager
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.fts.core.FTSDataColumnPreferences
jalview.fts.core.FTSDataColumnPreferences
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0.745762774.6%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.738095273.8%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.7142857371.4%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
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0.7142857371.4%
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jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
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0.7065217570.7%
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jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
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0.7028985670.3%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.695652269.6%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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0.687568.8%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.672131167.2%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.666666766.7%
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jalview.ws.sifts.SiftsSettings
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0.666666766.7%
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jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
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0.655172465.5%
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jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
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0.655172465.5%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.6470588464.7%
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jalview.gui.AssociatePdbFileWithSeq
jalview.gui.AssociatePdbFileWithSeq
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0.62562.5%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.62562.5%
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jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
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0.62562.5%
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jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.612244961.2%
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jalview.util.MapUtils
jalview.util.MapUtils
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0.608695660.9%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
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0.660%
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jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
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0.660%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.595238159.5%
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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0.594202959.4%
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jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
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0.583333358.3%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
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0.5762273757.6%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.567556.7%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.566037756.6%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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0.565217456.5%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.5656%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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mc_view.PDBChain
mc_view.PDBChain
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0.558201155.8%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.551020455.1%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.5555%
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jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
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0.5454545654.5%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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jalview.bin.argparser.ArgParser
jalview.bin.argparser.ArgParser
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0.526946152.7%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.5238095552.4%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.523255852.3%
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jalview.bin.argparser.StructureLine
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0.51612951.6%
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jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
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0.504950550.5%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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jalview.schemes.BlossomColourScheme
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jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.482758648.3%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.4808362448.1%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.4790697747.9%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.4772727247.7%
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jalview.schemes.ResidueColourScheme
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0.4761904847.6%
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jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.io.AlignFile
jalview.io.AlignFile
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0.466216246.6%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
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0.4579439245.8%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.4545%
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jalview.bin.argparser.ArgValue
jalview.bin.argparser.ArgValue
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0.447761244.8%
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jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
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0.4444444544.4%
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jalview.bin.ArgsParser
jalview.bin.ArgsParser
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0.4426229644.3%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.4358974443.6%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.435185243.5%
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jalview.bin.argparser.SubVals
jalview.bin.argparser.SubVals
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0.432989743.3%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4326923243.3%
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jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
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0.4324324443.2%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
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0.4313725543.1%
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jalview.ws2.actions.secstructpred.SecStructPredAction
jalview.ws2.actions.secstructpred.SecStructPredAction
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
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0.4242424442.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4183673641.8%
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org.json.JSONTokener
org.json.JSONTokener
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0.4132841241.3%
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jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
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0.412541.2%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.4112149541.1%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.4102564241%
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jalview.util.Comparison
jalview.util.Comparison
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0.4094488340.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.4076433240.8%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.3947368639.5%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3841463338.4%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.3815789538.2%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.3810623638.1%
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jalview.bin.argparser.ArgValuesMap
jalview.bin.argparser.ArgValuesMap
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0.380281738%
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jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
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0.3838%
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jalview.bin.Cache
jalview.bin.Cache
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0.379403837.9%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.37537.5%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.bin.argparser.ArgValues
jalview.bin.argparser.ArgValues
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0.3730158837.3%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.3737%
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.bin.Commands
jalview.bin.Commands
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0.3648648636.5%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.3630136836.3%
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jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
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0.3628318636.3%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3588850235.9%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.3585858635.9%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.3575757435.8%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.356115135.6%
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jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
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0.352941235.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.3493589834.9%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.3465346434.7%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.344202934.4%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.340277834%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.3362193433.6%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.334572533.5%
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jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
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0.3333333433.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.3333333433.3%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
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0.3280423332.8%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3255230232.6%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.3248407532.5%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3231552232.3%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.3221649532.2%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.3141852331.4%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.312531.2%
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jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
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0.3070866230.7%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.3056478530.6%
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jalview.viewmodel.ViewportRanges
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com.stevesoft.pat.Or
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ext.vamsas.ServiceHandle
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mc_view.Atom
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.2524916825.2%
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org.json.JSONObject.Null
org.json.JSONObject.Null
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jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.gui.IdwidthAdjuster
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jalview.datamodel.SequenceCursor
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jalview.util.MapList
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jalview.bin.Console
jalview.bin.Console
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jalview.gui.ScalePanel
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jalview.io.PDBFeatureSettings
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jalview.ws.dbsources.EBIAlfaFold
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.220%
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jalview.bin.JalviewTaskbar
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0.220%
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jalview.ws.params.simple.DoubleParameter
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jalview.ws.datamodel.alphafold.MappableContactMatrix
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jalview.ws.params.simple.StringParameter
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jalview.analysis.scoremodels.ScoreModels
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jalview.log.JLogger
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jalview.schemes.Blosum62ColourScheme
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jalview.datamodel.Alignment
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jalview.util.UserAgent
jalview.util.UserAgent
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
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jalview.fts.core.FTSRestClient
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jalview.ws.rest.RestClient
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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jalview.io.AppletFormatAdapter
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jalview.gui.AnnotationPanel
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jalview.gui.Desktop
jalview.gui.Desktop
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.1333333413.3%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
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0.1333333413.3%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.132812513.3%
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org.json.JSONObject
org.json.JSONObject
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0.1322549913.2%
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jalview.util.Platform
jalview.util.Platform
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0.1311881213.1%
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jalview.ws2.client.jpred4.JPred4WSClient
jalview.ws2.client.jpred4.JPred4WSClient
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0.1290322512.9%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.12429555512.4%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
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0.11428571511.4%
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jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
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0.1136363711.4%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1129943511.3%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.1095890411%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.util.FileUtils
jalview.util.FileUtils
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0.10416666410.4%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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0.10389610410.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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org.json.JSONArray
org.json.JSONArray
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0.1010638310.1%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0965517249.7%
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
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0.093759.4%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.092105269.2%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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0.090526319.1%
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jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
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0.086956528.7%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.0853658548.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.081632658.2%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.081081088.1%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.08011058%
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jalview.schemes.HmmerLocalBackground
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0.076923087.7%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
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0.075862077.6%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.074766357.5%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.072368427.2%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
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0.066339076.6%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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0.06474826.5%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
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0.063829796.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063655036.4%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.0616438356.2%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.gui.StructureChooser
jalview.gui.StructureChooser
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0.056856195.7%
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jalview.workers.InformationThread
jalview.workers.InformationThread
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0.0555555565.6%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0542452825.4%
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jalview.schemes.ColourSchemes
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0.0512820525.1%
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jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
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0.055%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.044642864.5%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
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0.044%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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0.0339943363.4%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
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0.033%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
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0.0296610173%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0254237282.5%
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jalview.util.MappingUtils
jalview.util.MappingUtils
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0.0224948882.2%
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
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0.017751481.8%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.017182131.7%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0170268511.7%
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jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.015325671.5%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.015094341.5%
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mc_view.PDBfile
mc_view.PDBfile
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0.0150375941.5%
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
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0.0141509441.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0135593221.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0129954521.3%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.0128205131.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0112359551.1%
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jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
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0.0102040811%
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jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
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0.0101522841%
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jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
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0.008620690.9%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.00722021660.7%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
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0.00103039670.1%
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