|
jalview.ws.params.simple.StringParameter.Builder
jalview.ws.params.simple.StringParameter.Builder
|
1.0100%
|
|
|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction.Builder
jalview.ws2.actions.alignment.AlignmentAction.Builder
|
1.0100%
|
|
|
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
|
1.0100%
|
|
|
jalview.ws2.api.WebService.Builder
jalview.ws2.api.WebService.Builder
|
1.0100%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction.Builder
jalview.ws2.actions.annotation.AnnotationAction.Builder
|
1.0100%
|
|
|
jalview.ws.params.simple.BooleanOption.Builder
jalview.ws.params.simple.BooleanOption.Builder
|
0.8571428785.7%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.ws.params.simple.Option.Builder
jalview.ws.params.simple.Option.Builder
|
0.880%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.880%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.785234978.5%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.738095273.8%
|
|
|
jalview.ws2.client.slivka.SlivkaParamStoreFactory
jalview.ws2.client.slivka.SlivkaParamStoreFactory
|
0.7028985670.3%
|
|
|
jalview.ws.params.simple.DoubleParameter.Builder
jalview.ws.params.simple.DoubleParameter.Builder
|
0.655172465.5%
|
|
|
jalview.ws.params.simple.IntegerParameter.Builder
jalview.ws.params.simple.IntegerParameter.Builder
|
0.655172465.5%
|
|
|
jalview.ws2.actions.BaseAction.Builder
jalview.ws2.actions.BaseAction.Builder
|
0.6190476461.9%
|
|
|
jalview.ws2.actions.alignment.AlignmentAction
jalview.ws2.actions.alignment.AlignmentAction
|
0.660%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.660%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.513227551.3%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.50129250.1%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.485714348.6%
|
|
|
jalview.ws2.actions.annotation.AnnotationAction
jalview.ws2.actions.annotation.AnnotationAction
|
0.4444444544.4%
|
|
|
jalview.ws2.actions.secstructpred.SecStructPredAction
jalview.ws2.actions.secstructpred.SecStructPredAction
|
0.4285714342.9%
|
|
|
jalview.ws.params.simple.BooleanOption
jalview.ws.params.simple.BooleanOption
|
0.4242424442.4%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.423469442.3%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.423255842.3%
|
|
|
org.json.JSONTokener
org.json.JSONTokener
|
0.4132841241.3%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.3959183739.6%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.345755734.6%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.3396226534%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3149606331.5%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.313725531.4%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.3076923230.8%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3055555530.6%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2909090829.1%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.285714328.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.2837045828.4%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.2692307826.9%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.2653061226.5%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.250909125.1%
|
|
|
org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.ws.params.simple.Option
jalview.ws.params.simple.Option
|
0.2333333323.3%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2309623423.1%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.220543822.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.2150127321.5%
|
|
|
jalview.ws.params.simple.IntegerParameter
jalview.ws.params.simple.IntegerParameter
|
0.2142857221.4%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.2083333320.8%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2042253520.4%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.2014388420.1%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.1959459519.6%
|
|
|
jalview.ws.params.simple.DoubleParameter
jalview.ws.params.simple.DoubleParameter
|
0.1956521719.6%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.1933701619.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.191082819.1%
|
|
|
jalview.ws.params.simple.StringParameter
jalview.ws.params.simple.StringParameter
|
0.190476219%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.190476219%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.180055418%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1458333314.6%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1428571514.3%
|
|
|
org.json.JSONObject
org.json.JSONObject
|
0.1322549913.2%
|
|
|
jalview.ws2.client.jpred4.JPred4WSClient
jalview.ws2.client.jpred4.JPred4WSClient
|
0.1290322512.9%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.11428571511.4%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.108810.9%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
org.json.JSONArray
org.json.JSONArray
|
0.1010638310.1%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.09523819.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.089622649%
|
|
|
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
jalview.ws2.client.slivka.SlivkaAlignmentWSClient
|
0.086956528.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0865384648.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.082758628.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.076666677.7%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.0616438356.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0576131685.8%
|
|
|
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
jalview.ws2.client.slivka.SlivkaAnnotationWSClient
|
0.055%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.0466321264.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.ws2.client.slivka.SlivkaWSClient
jalview.ws2.client.slivka.SlivkaWSClient
|
0.033%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0291170942.9%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0123762381.2%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.0050505050.5%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0040485830.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.00178412130.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00111482720.1%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
