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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.io.gff.Gff2Helper
jalview.io.gff.Gff2Helper
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1.0100%
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jalview.datamodel.SequenceDummy
jalview.datamodel.SequenceDummy
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.workers.ComplementConsensusThread
jalview.workers.ComplementConsensusThread
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0.916666791.7%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.881642588.2%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
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0.821428682.1%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.812581.2%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
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0.7575%
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jalview.io.gff.GffHelperFactory
jalview.io.gff.GffHelperFactory
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0.7575%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.7333333573.3%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.analysis.CodingUtils
jalview.analysis.CodingUtils
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0.7068965470.7%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.666666766.7%
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jalview.io.gff.ExonerateHelper
jalview.io.gff.ExonerateHelper
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0.6190476461.9%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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0.660%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.567556.7%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.508196750.8%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
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0.550%
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jalview.io.gff.GffHelperBase
jalview.io.gff.GffHelperBase
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0.4834123348.3%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.4727272747.3%
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jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
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0.447368444.7%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.439189243.9%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4024390340.2%
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jalview.datamodel.MappingType
jalview.datamodel.MappingType
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
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0.37537.5%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3719412737.2%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3693379836.9%
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jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
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0.3617747436.2%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.3636%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3423423534.2%
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jalview.util.Comparison
jalview.util.Comparison
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0.3228346432.3%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.315217431.5%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.3113207531.1%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.274826827.5%
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jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
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0.2687526.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.266229526.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2548476525.5%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.io.FeaturesFile
jalview.io.FeaturesFile
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0.2270029622.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2249208122.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2183098621.8%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.2175732321.8%
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
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0.2123287621.2%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2024169120.2%
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jalview.io.gff.InterProScanHelper
jalview.io.gff.InterProScanHelper
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0.220%
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jalview.util.MapList
jalview.util.MapList
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0.19219.2%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.1902017319%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1891168718.9%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1847133818.5%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1779935217.8%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.172413817.2%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.1582733815.8%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.1490066214.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
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0.1333333413.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.132812513.3%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.bin.Console
jalview.bin.Console
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0.09905669.9%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0965517249.7%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
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0.09523819.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.093220349.3%
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jalview.util.MappingUtils
jalview.util.MappingUtils
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0.089979559%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.088888898.9%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.0853658548.5%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
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0.081632658.2%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.08055018.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.079718648%
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jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
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0.076923087.7%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.074201637.4%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.072368427.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.068965526.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.log.JLogger
jalview.log.JLogger
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0.065934076.6%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.0657894766.6%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063655036.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.0635359146.4%
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jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
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0.06256.2%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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0.0519480525.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.0512820525.1%
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jalview.bin.Cache
jalview.bin.Cache
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0.05013555%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.util.Platform
jalview.util.Platform
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0.0470297044.7%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0445292634.5%
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jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
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0.042553194.3%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.042399174.2%
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jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
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0.038461543.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
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0.0367346933.7%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.0328874033.3%
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jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
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0.0296610173%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
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0.0268456382.7%
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jalview.util.FileUtils
jalview.util.FileUtils
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0.0267857152.7%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.0238095242.4%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0238095242.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.0235294122.4%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.0232558142.3%
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
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0.0188679251.9%
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jalview.workers.InformationThread
jalview.workers.InformationThread
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0.0185185191.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
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jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0129954521.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.01275510251.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0105092961.1%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.009842521%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.0080971660.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.00722021660.7%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0070754720.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00351185260.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00343642620.3%
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