|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.695652269.6%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.685714368.6%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
|
|
|
jalview.io.RnamlFile
jalview.io.RnamlFile
|
0.636363663.6%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.6162790761.6%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.660%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.660%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.546296354.6%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.4772727247.7%
|
|
|
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
|
0.4444444544.4%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.4242%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.3959183739.6%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
|
|
jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
|
|
|
jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.352941235.3%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.340277834%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.3020833430.2%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2981818329.8%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2788461427.9%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.263513526.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.2285714322.9%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2206896522.1%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.220%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.1828839318.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1689750716.9%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.1598639516%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1422594214.2%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.1226415112.3%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.1086956510.9%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.10791366510.8%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.09890119.9%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
0.098039229.8%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.090395489%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.0833333368.3%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.0714285757.1%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0705128247.1%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.057553965.8%
|
|
|
jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.0566037745.7%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.034752663.5%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0346534663.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0311653113.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0275862072.8%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0208333342.1%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0078740160.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0072756670.7%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00390189510.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.00178412130.2%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.00131147540.1%
|
|
