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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
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jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
|
1.0100%
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|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
|
1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
|
1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
1.0100%
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jalview.datamodel.SecondaryStructureCount.SymbolCounts
jalview.datamodel.SecondaryStructureCount.SymbolCounts
|
1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
1.0100%
|
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.8985507589.9%
|
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.89062589.1%
|
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jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.888888988.9%
|
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|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.866666786.7%
|
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
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mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.837583.7%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
|
0.8085106680.9%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
|
0.792452879.2%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
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jalview.datamodel.StructureViewerModel
jalview.datamodel.StructureViewerModel
|
0.7676%
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jalview.workers.AlignCalcManager2.WorkerManager
jalview.workers.AlignCalcManager2.WorkerManager
|
0.7575%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.738095273.8%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.7377049373.8%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
|
0.736842173.7%
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jalview.workers.AlignCalcManager2.SimpleWorkerManager
jalview.workers.AlignCalcManager2.SimpleWorkerManager
|
0.7142857371.4%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
|
0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
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jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.7065217570.7%
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jalview.datamodel.StartRegionIterator
jalview.datamodel.StartRegionIterator
|
0.694444469.4%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.666666766.7%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
|
0.666666766.7%
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jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
|
0.6538461465.4%
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jalview.ws.api.UIinfo
jalview.ws.api.UIinfo
|
0.6470588464.7%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.6470588464.7%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.6378737763.8%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.6285714562.9%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.62562.5%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
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jalview.datamodel.StructureViewerModel.StructureData
jalview.datamodel.StructureViewerModel.StructureData
|
0.62562.5%
|
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jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
|
0.62562.5%
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.6162790761.6%
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jalview.xml.binding.jalview.Pdbentry
jalview.xml.binding.jalview.Pdbentry
|
0.611111161.1%
|
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jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.605263260.5%
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
|
0.5961538659.6%
|
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
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jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
|
0.588235358.8%
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jalview.jbgui.GTreePanel
jalview.jbgui.GTreePanel
|
0.5789473757.9%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.5741666657.4%
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jalview.ws.jws2.PreferredServiceRegistry
jalview.ws.jws2.PreferredServiceRegistry
|
0.571428657.1%
|
|
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
|
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
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jalview.gui.TreePanel.TreeLoader
jalview.gui.TreePanel.TreeLoader
|
0.553191555.3%
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jalview.ws2.gui.WebServicesMenuManager
jalview.ws2.gui.WebServicesMenuManager
|
0.5428571754.3%
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mc_view.PDBChain
mc_view.PDBChain
|
0.5396825754%
|
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.526315852.6%
|
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.5238095552.4%
|
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com.stevesoft.pat.Boundary
com.stevesoft.pat.Boundary
|
0.518518551.9%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.514211951.4%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.550%
|
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
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jalview.xml.binding.jalview.Feature.OtherData
jalview.xml.binding.jalview.Feature.OtherData
|
0.550%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
|
0.550%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
|
0.550%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
|
0.550%
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jalview.xml.binding.jalview.JalviewModel.JGroup
jalview.xml.binding.jalview.JalviewModel.JGroup
|
0.550%
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jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns
jalview.xml.binding.jalview.JalviewModel.Viewport.HiddenColumns
|
0.550%
|
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|
jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
|
0.550%
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jalview.xml.binding.jalview.Sequence.DBRef
jalview.xml.binding.jalview.Sequence.DBRef
|
0.550%
|
|
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mc_view.Bond
mc_view.Bond
|
0.550%
|
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
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|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
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|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.4951923249.5%
|
|
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jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.4912280749.1%
|
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jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.484848548.5%
|
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jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
|
0.4838709548.4%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.4772727247.7%
|
|
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4671052746.7%
|
|
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.466101746.6%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.4649681446.5%
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jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.StructureState
|
0.464285746.4%
|
|
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.4591747245.9%
|
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jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
jalview.ws2.gui.WebServicesMenuManager.InteractiveServiceEntryGroup
|
0.4579439245.8%
|
|
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.453703745.4%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.4523809645.2%
|
|
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jalview.util.Format
jalview.util.Format
|
0.4430641844.3%
|
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.438259143.8%
|
|
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.4336734743.4%
|
|
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.4320557443.2%
|
|
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.4306688343.1%
|
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jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
|
0.4285714342.9%
|
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.4249422642.5%
|
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.4233333542.3%
|
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jalview.io.StructureFile
jalview.io.StructureFile
|
0.4186046441.9%
|
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.4131147641.3%
|
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jalview.workers.AlignCalcManager2
jalview.workers.AlignCalcManager2
|
0.4109589241.1%
|
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jalview.util.Comparison
jalview.util.Comparison
|
0.4094488340.9%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
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jalview.ws2.actions.BaseAction
jalview.ws2.actions.BaseAction
|
0.440%
|
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.39735139.7%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.388888938.9%
|
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jalview.datamodel.Range
jalview.datamodel.Range
|
0.388888938.9%
|
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.380566838.1%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3776978637.8%
|
|
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jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.37596937.6%
|
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.37537.5%
|
|
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jalview.bin.ApplicationSingletonProvider
jalview.bin.ApplicationSingletonProvider
|
0.37537.5%
|
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jalview.io.NewickFile
jalview.io.NewickFile
|
0.3709016437.1%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.368532236.9%
|
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.3564954735.6%
|
|
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3541666635.4%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.3536585335.4%
|
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|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.352750835.3%
|
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|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3446658834.5%
|
|
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.3430962334.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.3333333433.3%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
|
0.3333333433.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.3310344833.1%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.327272732.7%
|
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|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.3221649532.2%
|
|
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.3132075431.3%
|
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|
jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
|
0.312531.2%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.309090930.9%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.3076923230.8%
|
|
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.302631630.3%
|
|
|
jalview.ws2.api.WebService
jalview.ws2.api.WebService
|
0.330%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.2964376529.6%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.295731729.6%
|
|
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.294871829.5%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.2876712428.8%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
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mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.2705882527.1%
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jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
|
0.2702702627%
|
|
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jalview.xml.binding.jalview.JalviewModel.Tree
jalview.xml.binding.jalview.JalviewModel.Tree
|
0.2692307826.9%
|
|
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2654867226.5%
|
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.2608695626.1%
|
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.25665125.7%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.254567625.5%
|
|
|
jalview.ws.api.ServiceWithParameters
jalview.ws.api.ServiceWithParameters
|
0.2525%
|
|
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2525%
|
|
|
jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.2525%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.2525%
|
|
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jalview.ws.jws2.Jws2ClientFactory
jalview.ws.jws2.Jws2ClientFactory
|
0.24824.8%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
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jalview.io.FileParse
jalview.io.FileParse
|
0.2409972324.1%
|
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.2424%
|
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|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2424%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.2397260224%
|
|
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jalview.ws.WSClient
jalview.ws.WSClient
|
0.2352941223.5%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
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|
jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
|
0.2307692323.1%
|
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.2265512222.7%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.2265060222.7%
|
|
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.2176165721.8%
|
|
|
jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.2118959121.2%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.204281920.4%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2042253520.4%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.200787420.1%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.220%
|
|
|
jalview.structure.StructureCommand
jalview.structure.StructureCommand
|
0.220%
|
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|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.1962616919.6%
|
|
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jalview.io.AlignFile
jalview.io.AlignFile
|
0.1959459519.6%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
|
0.1935483819.4%
|
|
|
jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.1914062519.1%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.1914062519.1%
|
|
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.190476219%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.187518.8%
|
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|
jalview.log.JLogger
jalview.log.JLogger
|
0.1868131918.7%
|
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|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.1835075518.4%
|
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
|
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|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.1794871817.9%
|
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.1642651316.4%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.1598639516%
|
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.159420315.9%
|
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jalview.util.StringUtils
jalview.util.StringUtils
|
0.1581920815.8%
|
|
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1562515.6%
|
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.1555555615.6%
|
|
|
jalview.gui.TreePanel
jalview.gui.TreePanel
|
0.1478599214.8%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.1466666614.7%
|
|
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.145811814.6%
|
|
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1428571514.3%
|
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|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1371321213.7%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.1367924513.7%
|
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.1333333413.3%
|
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jalview.schemes.HmmerGlobalBackground
jalview.schemes.HmmerGlobalBackground
|
0.1333333413.3%
|
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1333333413.3%
|
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jalview.bin.Console
jalview.bin.Console
|
0.1320754713.2%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.12486064412.5%
|
|
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.12320328512.3%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.121612.2%
|
|
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jalview.ws2.client.api.AbstractWebServiceDiscoverer
jalview.ws2.client.api.AbstractWebServiceDiscoverer
|
0.1132075511.3%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.10736842510.7%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.10416666410.4%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.10389610410.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1028806610.3%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0965346549.7%
|
|
|
jalview.ws2.client.jpred4.JPred4WSDiscoverer
jalview.ws2.client.jpred4.JPred4WSDiscoverer
|
0.09523819.5%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0848484868.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.081632658.2%
|
|
|
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
jalview.ws2.client.ebi.JobDispatcherWSDiscoverer
|
0.081632658.2%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.076923087.7%
|
|
|
jalview.schemes.HmmerLocalBackground
jalview.schemes.HmmerLocalBackground
|
0.076923087.7%
|
|
|
jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.076923087.7%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0762711847.6%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.074766357.5%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.069060776.9%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.068965526.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.063829796.4%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.0576923085.8%
|
|
|
jalview.workers.InformationThread
jalview.workers.InformationThread
|
0.0555555565.6%
|
|
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.0551724145.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.05013555%
|
|
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jalview.ws2.params.SimpleParamDatastore
jalview.ws2.params.SimpleParamDatastore
|
0.055%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.043478264.3%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.0416666684.2%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.gui.SliderPanel
jalview.gui.SliderPanel
|
0.0348837233.5%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
|
0.0275590552.8%
|
|
|
jalview.ws2.client.slivka.SlivkaWSDiscoverer
jalview.ws2.client.slivka.SlivkaWSDiscoverer
|
0.0268456382.7%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.0267857152.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0254237282.5%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0237288142.4%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.0232558142.3%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.017182131.7%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0170268511.7%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
|
|
jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.01374292651.4%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0129954521.3%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.010101011%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
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