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jalview.ws2.actions.hmmer.PhmmerAction.Builder
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
jalview.ws2.actions.secstructpred.SecStructPredAction.Builder
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1.0100%
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jalview.ws2.api.WebService.Builder
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jalview.ws.params.ParamDatastoreI
jalview.ws.params.ParamDatastoreI
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1.0100%
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jalview.jbgui.GAlignmentPanel
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jalview.analysis.Conservation
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jalview.datamodel.Profiles
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jalview.json.binding.biojs.BioJSReleasePojo
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jalview.workers.ConsensusThread
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0.880%
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jalview.ws2.api.WebService
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0.880%
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jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.workers.SecondaryStructureConsensusThread
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0.75471775.5%
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jalview.workers.AlignCalcManager2.WorkerManager
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0.7575%
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jalview.ws2.client.jpred4.JPred4WSDiscoverer
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jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.datamodel.Profile
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jalview.bin.argparser.SubVals
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jalview.log.JalviewAppender
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org.json.simple.parser.Yylex
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jalview.ws.jws2.Jws2Discoverer
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jalview.viewmodel.styles.ViewStyle
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0.30797130.8%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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ext.vamsas.ServiceHandle
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jalview.util.UserAgent
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jalview.gui.Desktop
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jalview.gui.AlignFrame
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jalview.util.FileUtils
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jalview.ws.WSClient
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org.json.simple.parser.Yytoken
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jalview.util.JSONUtils
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jalview.util.Platform
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jalview.schemes.RNAHelicesColour
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jalview.schemes.HmmerLocalBackground
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jalview.util.ChannelProperties
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jalview.util.LaunchUtils
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jalview.analysis.CrossRef
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jalview.util.ColorUtils
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jalview.bin.argparser.Arg
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.workers.InformationThread
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jalview.schemes.ColourSchemes
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jalview.analysis.GeneticCodes
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jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.util.DBRefUtils
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jalview.gui.WsParamSetManager
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0.0429447854.3%
|
|
|
jalview.schemes.HMMMatchScoreColourScheme
jalview.schemes.HMMMatchScoreColourScheme
|
0.042553194.3%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.042399174.2%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0408163264.1%
|
|
|
jalview.schemes.HmmerColourScheme
jalview.schemes.HmmerColourScheme
|
0.038461543.8%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.035623413.6%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.0296610173%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0235294122.4%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0232558142.3%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0170268511.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.015325671.5%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
|
|
jalview.hmmer.HmmerCommand
jalview.hmmer.HmmerCommand
|
0.0141509441.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0129954521.3%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.01275510251.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0112359551.1%
|
|
|
jalview.ws2.client.ebi.ParamStores
jalview.ws2.client.ebi.ParamStores
|
0.0102040811%
|
|
|
jalview.ws2.client.ebi.PhmmerWSClient
jalview.ws2.client.ebi.PhmmerWSClient
|
0.0101522841%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.009842521%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0080971660.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0070754720.7%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00351185260.4%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
