jalviewX
File SequenceFetcher.java
Coverage histogram
53% of files have more coverage
Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| SequenceFetcher | 60 | 346 | 132 | 492 | ||
| SequenceFetcher.DatabaseAuthority | 267 | 0 | 0 | 0 | ||
| SequenceFetcher.DatabaseSource | 272 | 0 | 0 | 0 |
Contributing tests
This file is covered by 96 tests.
.
Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.gui; | |
| 22 | ||
| 23 | import jalview.api.FeatureSettingsModelI; | |
| 24 | import jalview.bin.Cache; | |
| 25 | import jalview.datamodel.AlignmentI; | |
| 26 | import jalview.datamodel.DBRefEntry; | |
| 27 | import jalview.datamodel.SequenceI; | |
| 28 | import jalview.fts.core.GFTSPanel; | |
| 29 | import jalview.fts.service.pdb.PDBFTSPanel; | |
| 30 | import jalview.fts.service.uniprot.UniprotFTSPanel; | |
| 31 | import jalview.io.FileFormatI; | |
| 32 | import jalview.io.gff.SequenceOntologyI; | |
| 33 | import jalview.util.DBRefUtils; | |
| 34 | import jalview.util.MessageManager; | |
| 35 | import jalview.util.Platform; | |
| 36 | import jalview.ws.seqfetcher.DbSourceProxy; | |
| 37 | ||
| 38 | import java.awt.BorderLayout; | |
| 39 | import java.awt.Font; | |
| 40 | import java.awt.event.ActionEvent; | |
| 41 | import java.awt.event.ActionListener; | |
| 42 | import java.awt.event.KeyAdapter; | |
| 43 | import java.awt.event.KeyEvent; | |
| 44 | import java.util.ArrayList; | |
| 45 | import java.util.Arrays; | |
| 46 | import java.util.Collections; | |
| 47 | import java.util.Iterator; | |
| 48 | import java.util.List; | |
| 49 | ||
| 50 | import javax.swing.JButton; | |
| 51 | import javax.swing.JCheckBox; | |
| 52 | import javax.swing.JInternalFrame; | |
| 53 | import javax.swing.JLabel; | |
| 54 | import javax.swing.JPanel; | |
| 55 | import javax.swing.JScrollPane; | |
| 56 | import javax.swing.JTextArea; | |
| 57 | import javax.swing.SwingConstants; | |
| 58 | import javax.swing.tree.DefaultMutableTreeNode; | |
| 59 | ||
| 60 | public class SequenceFetcher extends JPanel implements Runnable | |
| 61 | { | |
| 62 | JLabel dbeg = new JLabel(); | |
| 63 | ||
| 64 | JDatabaseTree database; | |
| 65 | ||
| 66 | JButton databaseButt; | |
| 67 | ||
| 68 | JLabel jLabel1 = new JLabel(); | |
| 69 | ||
| 70 | JCheckBox replacePunctuation = new JCheckBox(); | |
| 71 | ||
| 72 | JButton ok = new JButton(); | |
| 73 | ||
| 74 | JButton clear = new JButton(); | |
| 75 | ||
| 76 | JButton example = new JButton(); | |
| 77 | ||
| 78 | JButton close = new JButton(); | |
| 79 | ||
| 80 | JButton back = new JButton(); | |
| 81 | ||
| 82 | JPanel jPanel1 = new JPanel(); | |
| 83 | ||
| 84 | JTextArea textArea = new JTextArea(); | |
| 85 | ||
| 86 | JScrollPane jScrollPane1 = new JScrollPane(); | |
| 87 | ||
| 88 | JPanel jPanel2 = new JPanel(); | |
| 89 | ||
| 90 | JPanel jPanel3 = new JPanel(); | |
| 91 | ||
| 92 | JPanel jPanel4 = new JPanel(); | |
| 93 | ||
| 94 | BorderLayout borderLayout1 = new BorderLayout(); | |
| 95 | ||
| 96 | BorderLayout borderLayout2 = new BorderLayout(); | |
| 97 | ||
| 98 | BorderLayout borderLayout3 = new BorderLayout(); | |
| 99 | ||
| 100 | JInternalFrame frame; | |
| 101 | ||
| 102 | IProgressIndicator guiWindow; | |
| 103 | ||
| 104 | AlignFrame alignFrame; | |
| 105 | ||
| 106 | StringBuffer result; | |
| 107 | ||
| 108 | final String noDbSelected = "-- Select Database --"; | |
| 109 | ||
| 110 | private static jalview.ws.SequenceFetcher sfetch = null; | |
| 111 | ||
| 112 | private static boolean _initingFetcher = false; | |
| 113 | ||
| 114 | private static Thread initingThread = null; | |
| 115 | ||
| 116 | 0 |  public JTextArea getTextArea() |
| 117 | { | |
| 118 | 0 | return textArea; |
| 119 | } | |
| 120 | ||
| 121 | /** | |
| 122 | * Blocking method that initialises and returns the shared instance of the | |
| 123 | * SequenceFetcher client | |
| 124 | * | |
| 125 | * @param guiWindow | |
| 126 | * - where the initialisation delay message should be shown | |
| 127 | * @return the singleton instance of the sequence fetcher client | |
| 128 | */ | |
| 129 | 1102 | public static jalview.ws.SequenceFetcher getSequenceFetcherSingleton( |
| 130 | final IProgressIndicator guiWindow) | |
| 131 | { | |
| 132 | 1102 | if (_initingFetcher && initingThread != null && initingThread.isAlive()) |
| 133 | { | |
| 134 | 0 | if (guiWindow != null) |
| 135 | { | |
| 136 | 0 | guiWindow.setProgressBar( |
| 137 | MessageManager.getString( | |
| 138 | "status.waiting_sequence_database_fetchers_init"), | |
| 139 | Thread.currentThread().hashCode()); | |
| 140 | } | |
| 141 | // initting happening on another thread - so wait around to see if it | |
| 142 | // finishes. | |
| 143 | 0 | while (_initingFetcher && initingThread != null |
| 144 | && initingThread.isAlive()) | |
| 145 | { | |
| 146 | 0 | try |
| 147 | { | |
| 148 | 0 | Thread.sleep(10); |
| 149 | } catch (Exception e) | |
| 150 | { | |
| 151 | } | |
| 152 | 0 | ; |
| 153 | } | |
| 154 | 0 | if (guiWindow != null) |
| 155 | { | |
| 156 | 0 | guiWindow.setProgressBar( |
| 157 | MessageManager.getString( | |
| 158 | "status.waiting_sequence_database_fetchers_init"), | |
| 159 | Thread.currentThread().hashCode()); | |
| 160 | } | |
| 161 | } | |
| 162 | 1102 | if (sfetch == null) |
| 163 | { | |
| 164 | 1 | _initingFetcher = true; |
| 165 | 1 | initingThread = Thread.currentThread(); |
| 166 | /** | |
| 167 | * give a visual indication that sequence fetcher construction is occuring | |
| 168 | */ | |
| 169 | 1 | if (guiWindow != null) |
| 170 | { | |
| 171 | 1 | guiWindow.setProgressBar( |
| 172 | MessageManager.getString( | |
| 173 | "status.init_sequence_database_fetchers"), | |
| 174 | Thread.currentThread().hashCode()); | |
| 175 | } | |
| 176 | ||
| 177 | 1 | jalview.ws.SequenceFetcher sf = new jalview.ws.SequenceFetcher(); |
| 178 | 1 | if (guiWindow != null) |
| 179 | { | |
| 180 | 1 | guiWindow.setProgressBar(null, Thread.currentThread().hashCode()); |
| 181 | } | |
| 182 | 1 | sfetch = sf; |
| 183 | 1 | _initingFetcher = false; |
| 184 | 1 | initingThread = null; |
| 185 | } | |
| 186 | 1102 | return sfetch; |
| 187 | } | |
| 188 | ||
| 189 | private IProgressIndicator progressIndicator; | |
| 190 | ||
| 191 | private volatile boolean _isConstructing = false; | |
| 192 | ||
| 193 | private List<AlignFrame> newAlframes = null; | |
| 194 | ||
| 195 | 0 | public SequenceFetcher(IProgressIndicator guiIndic) |
| 196 | { | |
| 197 | 0 | this(guiIndic, null, null); |
| 198 | } | |
| 199 | ||
| 200 | 0 | public SequenceFetcher(IProgressIndicator guiIndic, |
| 201 | final String selectedDb, final String queryString) | |
| 202 | { | |
| 203 | 0 | this._isConstructing = true; |
| 204 | 0 | this.progressIndicator = guiIndic; |
| 205 | 0 | final SequenceFetcher us = this; |
| 206 | // launch initialiser thread | |
| 207 | 0 | Thread sf = new Thread(new Runnable() |
| 208 | { | |
| 209 | ||
| 210 | 0 | @Override |
| 211 | public void run() | |
| 212 | { | |
| 213 | 0 | if (getSequenceFetcherSingleton(progressIndicator) != null) |
| 214 | { | |
| 215 | 0 | us.initGui(progressIndicator, selectedDb, queryString); |
| 216 | 0 | us._isConstructing = false; |
| 217 | } | |
| 218 | else | |
| 219 | { | |
| 220 | 0 | javax.swing.SwingUtilities.invokeLater(new Runnable() |
| 221 | { | |
| 222 | 0 | @Override |
| 223 | public void run() | |
| 224 | { | |
| 225 | 0 | JvOptionPane.showInternalMessageDialog(Desktop.desktop, |
| 226 | MessageManager.getString( | |
| 227 | "warn.couldnt_create_sequence_fetcher_client"), | |
| 228 | MessageManager.getString( | |
| 229 | "label.couldnt_create_sequence_fetcher"), | |
| 230 | JvOptionPane.ERROR_MESSAGE); | |
| 231 | } | |
| 232 | }); | |
| 233 | ||
| 234 | // raise warning dialog | |
| 235 | } | |
| 236 | } | |
| 237 | }); | |
| 238 | 0 | sf.start(); |
| 239 | } | |
| 240 | ||
| 241 | /** | |
| 242 | * blocking call which creates a new sequence fetcher panel, configures it and | |
| 243 | * presses the OK button with the given database and query. | |
| 244 | * | |
| 245 | * @param database | |
| 246 | * @param query | |
| 247 | */ | |
| 248 | 0 | public static List<AlignFrame> fetchAndShow(String database, String query) |
| 249 | { | |
| 250 | 0 | final SequenceFetcher sf = new SequenceFetcher(Desktop.instance, |
| 251 | database, query); | |
| 252 | 0 | while (sf._isConstructing) |
| 253 | { | |
| 254 | 0 | try |
| 255 | { | |
| 256 | 0 | Thread.sleep(50); |
| 257 | } catch (Exception q) | |
| 258 | { | |
| 259 | 0 | return Collections.emptyList(); |
| 260 | } | |
| 261 | } | |
| 262 | 0 | sf.newAlframes = new ArrayList<>(); |
| 263 | 0 | sf.run(); |
| 264 | 0 | return sf.newAlframes; |
| 265 | } | |
| 266 | ||
| 267 | private class DatabaseAuthority extends DefaultMutableTreeNode | |
| 268 | { | |
| 269 | ||
| 270 | }; | |
| 271 | ||
| 272 | private class DatabaseSource extends DefaultMutableTreeNode | |
| 273 | { | |
| 274 | ||
| 275 | }; | |
| 276 | ||
| 277 | /** | |
| 278 | * initialise the database and query for this fetcher panel | |
| 279 | * | |
| 280 | * @param selectedDb | |
| 281 | * - string that should correspond to a sequence fetcher | |
| 282 | * @param queryString | |
| 283 | * - string that will be entered in the query dialog | |
| 284 | * @return true if UI was configured with valid database and query string | |
| 285 | */ | |
| 286 | 0 | protected boolean setInitialQuery(String selectedDb, String queryString) |
| 287 | { | |
| 288 | 0 | if (selectedDb == null || selectedDb.trim().length() == 0) |
| 289 | { | |
| 290 | 0 | return false; |
| 291 | } | |
| 292 | 0 | try |
| 293 | { | |
| 294 | 0 | List<DbSourceProxy> sp = sfetch.getSourceProxy(selectedDb); |
| 295 | 0 | for (DbSourceProxy sourcep : sp) |
| 296 | { | |
| 297 | 0 | if (sourcep.getTier() == 0) |
| 298 | { | |
| 299 | 0 | database.selection = Arrays |
| 300 | .asList(new DbSourceProxy[] | |
| 301 | { sourcep }); | |
| 302 | 0 | break; |
| 303 | } | |
| 304 | } | |
| 305 | 0 | if (database.selection == null || database.selection.size() == 0) |
| 306 | { | |
| 307 | 0 | System.err.println( |
| 308 | "Ignoring fetch parameter db='" + selectedDb + "'"); | |
| 309 | 0 | return false; |
| 310 | } | |
| 311 | 0 | textArea.setText(queryString); |
| 312 | } catch (Exception q) | |
| 313 | { | |
| 314 | 0 | System.err.println("Ignoring fetch parameter db='" + selectedDb |
| 315 | + "' and query='" + queryString + "'"); | |
| 316 | 0 | return false; |
| 317 | } | |
| 318 | 0 | return true; |
| 319 | } | |
| 320 | ||
| 321 | /** | |
| 322 | * called by thread spawned by constructor | |
| 323 | * | |
| 324 | * @param guiWindow | |
| 325 | * @param queryString | |
| 326 | * @param selectedDb | |
| 327 | */ | |
| 328 | 0 | private void initGui(IProgressIndicator guiWindow, String selectedDb, |
| 329 | String queryString) | |
| 330 | { | |
| 331 | 0 | this.guiWindow = guiWindow; |
| 332 | 0 | if (guiWindow instanceof AlignFrame) |
| 333 | { | |
| 334 | 0 | alignFrame = (AlignFrame) guiWindow; |
| 335 | } | |
| 336 | 0 | database = new JDatabaseTree(sfetch); |
| 337 | 0 | try |
| 338 | { | |
| 339 | 0 | jbInit(); |
| 340 | /* | |
| 341 | * configure the UI with any query parameters we were called with | |
| 342 | */ | |
| 343 | 0 | if (!setInitialQuery(selectedDb, queryString)) |
| 344 | { | |
| 345 | /* | |
| 346 | * none provided, so show the database chooser | |
| 347 | */ | |
| 348 | 0 | database.waitForInput(); |
| 349 | } | |
| 350 | } catch (Exception ex) | |
| 351 | { | |
| 352 | 0 | ex.printStackTrace(); |
| 353 | } | |
| 354 | ||
| 355 | 0 | frame = new JInternalFrame(); |
| 356 | 0 | frame.setContentPane(this); |
| 357 | 0 | if (Platform.isAMac()) |
| 358 | { | |
| 359 | 0 | Desktop.addInternalFrame(frame, getFrameTitle(), false, 400, 240); |
| 360 | } | |
| 361 | else | |
| 362 | { | |
| 363 | 0 | Desktop.addInternalFrame(frame, getFrameTitle(), false, 400, 180); |
| 364 | } | |
| 365 | } | |
| 366 | ||
| 367 | 0 | private String getFrameTitle() |
| 368 | { | |
| 369 | 0 | return ((alignFrame == null) |
| 370 | ? MessageManager.getString("label.new_sequence_fetcher") | |
| 371 | : MessageManager | |
| 372 | .getString("label.additional_sequence_fetcher")); | |
| 373 | } | |
| 374 | ||
| 375 | GFTSPanel parentFTSframe = null; | |
| 376 | /** | |
| 377 | * change the buttons so they fit with the FTS panel. | |
| 378 | */ | |
| 379 | 0 | public void embedWithFTSPanel(GFTSPanel toClose) |
| 380 | { | |
| 381 | 0 | back.setVisible(true); |
| 382 | 0 | parentFTSframe = toClose; |
| 383 | } | |
| 384 | 0 | private void jbInit() throws Exception |
| 385 | { | |
| 386 | 0 | this.setLayout(borderLayout2); |
| 387 | ||
| 388 | 0 | database.setFont(JvSwingUtils.getLabelFont()); |
| 389 | 0 | dbeg.setFont(new java.awt.Font("Verdana", Font.BOLD, 11)); |
| 390 | 0 | jLabel1.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11)); |
| 391 | 0 | jLabel1.setHorizontalAlignment(SwingConstants.CENTER); |
| 392 | 0 | jLabel1.setText(MessageManager |
| 393 | .getString("label.separate_multiple_accession_ids")); | |
| 394 | ||
| 395 | 0 | replacePunctuation.setHorizontalAlignment(SwingConstants.CENTER); |
| 396 | 0 | replacePunctuation |
| 397 | .setFont(new java.awt.Font("Verdana", Font.ITALIC, 11)); | |
| 398 | 0 | replacePunctuation.setText( |
| 399 | MessageManager.getString("label.replace_commas_semicolons")); | |
| 400 | 0 | ok.setText(MessageManager.getString("action.ok")); |
| 401 | 0 | ok.addActionListener(new ActionListener() |
| 402 | { | |
| 403 | 0 | @Override |
| 404 | public void actionPerformed(ActionEvent e) | |
| 405 | { | |
| 406 | 0 | ok_actionPerformed(); |
| 407 | } | |
| 408 | }); | |
| 409 | 0 | clear.setText(MessageManager.getString("action.clear")); |
| 410 | 0 | clear.addActionListener(new ActionListener() |
| 411 | { | |
| 412 | 0 | @Override |
| 413 | public void actionPerformed(ActionEvent e) | |
| 414 | { | |
| 415 | 0 | clear_actionPerformed(); |
| 416 | } | |
| 417 | }); | |
| 418 | ||
| 419 | 0 | example.setText(MessageManager.getString("label.example")); |
| 420 | 0 | example.addActionListener(new ActionListener() |
| 421 | { | |
| 422 | 0 | @Override |
| 423 | public void actionPerformed(ActionEvent e) | |
| 424 | { | |
| 425 | 0 | example_actionPerformed(); |
| 426 | } | |
| 427 | }); | |
| 428 | 0 | close.setText(MessageManager.getString("action.cancel")); |
| 429 | 0 | close.addActionListener(new ActionListener() |
| 430 | { | |
| 431 | 0 | @Override |
| 432 | public void actionPerformed(ActionEvent e) | |
| 433 | { | |
| 434 | 0 | close_actionPerformed(e); |
| 435 | } | |
| 436 | }); | |
| 437 | 0 | back.setText(MessageManager.getString("action.back")); |
| 438 | 0 | back.addActionListener(new ActionListener() |
| 439 | { | |
| 440 | 0 | @Override |
| 441 | public void actionPerformed(ActionEvent e) | |
| 442 | { | |
| 443 | 0 | parentFTSframe.btn_back_ActionPerformed(); |
| 444 | } | |
| 445 | }); | |
| 446 | // back not visible unless embedded | |
| 447 | 0 | back.setVisible(false); |
| 448 | 0 | textArea.setFont(JvSwingUtils.getLabelFont()); |
| 449 | 0 | textArea.setLineWrap(true); |
| 450 | 0 | textArea.addKeyListener(new KeyAdapter() |
| 451 | { | |
| 452 | 0 | @Override |
| 453 | public void keyPressed(KeyEvent e) | |
| 454 | { | |
| 455 | 0 | if (e.getKeyCode() == KeyEvent.VK_ENTER) |
| 456 | { | |
| 457 | 0 | ok_actionPerformed(); |
| 458 | } | |
| 459 | } | |
| 460 | }); | |
| 461 | 0 | jPanel3.setLayout(borderLayout1); |
| 462 | 0 | borderLayout1.setVgap(5); |
| 463 | 0 | jPanel1.add(back); |
| 464 | 0 | jPanel1.add(example); |
| 465 | 0 | jPanel1.add(clear); |
| 466 | 0 | jPanel1.add(ok); |
| 467 | 0 | jPanel1.add(close); |
| 468 | 0 | jPanel2.setLayout(borderLayout3); |
| 469 | 0 | databaseButt = /*database.getDatabaseSelectorButton(); |
| 470 | final JButton viewdbs =*/new JButton( | |
| 471 | MessageManager.getString("action.select_ddbb")); | |
| 472 | 0 | databaseButt.addActionListener(new ActionListener() |
| 473 | { | |
| 474 | ||
| 475 | 0 | @Override |
| 476 | public void actionPerformed(ActionEvent arg0) | |
| 477 | { | |
| 478 | 0 | hidePanel(); |
| 479 | 0 | database.showDialog(); |
| 480 | } | |
| 481 | }); | |
| 482 | 0 | databaseButt.setFont(JvSwingUtils.getLabelFont()); |
| 483 | 0 | database.addActionListener(new ActionListener() |
| 484 | { | |
| 485 | 0 | @Override |
| 486 | public void actionPerformed(ActionEvent e) | |
| 487 | { | |
| 488 | 0 | String currentSelection = database.getSelectedItem(); |
| 489 | 0 | if (currentSelection == null) |
| 490 | { | |
| 491 | 0 | close_actionPerformed(null); |
| 492 | } | |
| 493 | ||
| 494 | 0 | showPanel(); |
| 495 | ||
| 496 | 0 | if ("pdb".equalsIgnoreCase(currentSelection)) |
| 497 | { | |
| 498 | 0 | pdbSourceAction(); |
| 499 | } | |
| 500 | 0 | else if ("uniprot".equalsIgnoreCase(currentSelection)) |
| 501 | { | |
| 502 | 0 | uniprotSourceAction(); |
| 503 | } | |
| 504 | else | |
| 505 | { | |
| 506 | 0 | otherSourceAction(); |
| 507 | } | |
| 508 | 0 | database.action = -1; |
| 509 | } | |
| 510 | }); | |
| 511 | ||
| 512 | 0 | dbeg.setText(""); |
| 513 | 0 | jPanel2.add(databaseButt, java.awt.BorderLayout.NORTH); |
| 514 | 0 | jPanel2.add(dbeg, java.awt.BorderLayout.CENTER); |
| 515 | 0 | JPanel jPanel2a = new JPanel(new BorderLayout()); |
| 516 | 0 | jPanel2a.add(jLabel1, java.awt.BorderLayout.NORTH); |
| 517 | 0 | jPanel2a.add(replacePunctuation, java.awt.BorderLayout.SOUTH); |
| 518 | 0 | jPanel2.add(jPanel2a, java.awt.BorderLayout.SOUTH); |
| 519 | // jPanel2.setPreferredSize(new Dimension()) | |
| 520 | 0 | jPanel3.add(jScrollPane1, java.awt.BorderLayout.CENTER); |
| 521 | 0 | this.add(jPanel1, java.awt.BorderLayout.SOUTH); |
| 522 | 0 | this.add(jPanel3, java.awt.BorderLayout.CENTER); |
| 523 | 0 | this.add(jPanel2, java.awt.BorderLayout.NORTH); |
| 524 | 0 | jScrollPane1.getViewport().add(textArea); |
| 525 | } | |
| 526 | ||
| 527 | 0 | private void pdbSourceAction() |
| 528 | { | |
| 529 | 0 | databaseButt.setText(database.getSelectedItem()); |
| 530 | 0 | new PDBFTSPanel(this); |
| 531 | 0 | frame.dispose(); |
| 532 | } | |
| 533 | ||
| 534 | 0 | private void uniprotSourceAction() |
| 535 | { | |
| 536 | 0 | databaseButt.setText(database.getSelectedItem()); |
| 537 | 0 | new UniprotFTSPanel(this); |
| 538 | 0 | frame.dispose(); |
| 539 | } | |
| 540 | ||
| 541 | 0 | private void otherSourceAction() |
| 542 | { | |
| 543 | 0 | try |
| 544 | { | |
| 545 | 0 | databaseButt.setText(database.getSelectedItem() |
| 546 | 0 | + (database.getSelectedSources().size() > 1 ? " (and " |
| 547 | + database.getSelectedSources().size() + " others)" | |
| 548 | : "")); | |
| 549 | 0 | String eq = database.getExampleQueries(); |
| 550 | 0 | dbeg.setText(MessageManager.formatMessage("label.example_query_param", |
| 551 | new String[] | |
| 552 | { eq })); | |
| 553 | // TODO this should be a property of the SequenceFetcher whether commas are and | |
| 554 | // colons are allowed in the IDs... | |
| 555 | ||
| 556 | 0 | boolean enablePunct = !(eq != null && eq.indexOf(",") > -1); |
| 557 | 0 | replacePunctuation.setEnabled(enablePunct); |
| 558 | ||
| 559 | } catch (Exception ex) | |
| 560 | { | |
| 561 | 0 | dbeg.setText(""); |
| 562 | 0 | replacePunctuation.setEnabled(true); |
| 563 | } | |
| 564 | 0 | jPanel2.repaint(); |
| 565 | } | |
| 566 | ||
| 567 | 0 | protected void example_actionPerformed() |
| 568 | { | |
| 569 | 0 | DbSourceProxy db = null; |
| 570 | 0 | try |
| 571 | { | |
| 572 | 0 | textArea.setText(database.getExampleQueries()); |
| 573 | } catch (Exception ex) | |
| 574 | { | |
| 575 | } | |
| 576 | 0 | jPanel3.repaint(); |
| 577 | } | |
| 578 | ||
| 579 | 0 | protected void clear_actionPerformed() |
| 580 | { | |
| 581 | 0 | textArea.setText(""); |
| 582 | 0 | jPanel3.repaint(); |
| 583 | } | |
| 584 | ||
| 585 | 0 | public void close_actionPerformed(ActionEvent e) |
| 586 | { | |
| 587 | 0 | try |
| 588 | { | |
| 589 | 0 | frame.setClosed(true); |
| 590 | 0 | if (parentFTSframe!=null) |
| 591 | { | |
| 592 | 0 | parentFTSframe.btn_cancel_ActionPerformed(); |
| 593 | } | |
| 594 | } catch (Exception ex) | |
| 595 | { | |
| 596 | } | |
| 597 | } | |
| 598 | ||
| 599 | 0 | public void ok_actionPerformed() |
| 600 | { | |
| 601 | 0 | databaseButt.setEnabled(false); |
| 602 | 0 | example.setEnabled(false); |
| 603 | 0 | textArea.setEnabled(false); |
| 604 | 0 | ok.setEnabled(false); |
| 605 | 0 | close.setEnabled(false); |
| 606 | 0 | back.setEnabled(false); |
| 607 | 0 | Thread worker = new Thread(this); |
| 608 | 0 | worker.start(); |
| 609 | } | |
| 610 | ||
| 611 | 0 | private void resetDialog() |
| 612 | { | |
| 613 | 0 | databaseButt.setEnabled(true); |
| 614 | 0 | example.setEnabled(true); |
| 615 | 0 | textArea.setEnabled(true); |
| 616 | 0 | ok.setEnabled(true); |
| 617 | 0 | close.setEnabled(true); |
| 618 | 0 | back.setEnabled(parentFTSframe != null); |
| 619 | } | |
| 620 | ||
| 621 | 0 | @Override |
| 622 | public void run() | |
| 623 | { | |
| 624 | 0 | String error = ""; |
| 625 | 0 | if (!database.hasSelection()) |
| 626 | { | |
| 627 | 0 | error += "Please select the source database\n"; |
| 628 | } | |
| 629 | // TODO: make this transformation more configurable | |
| 630 | 0 | com.stevesoft.pat.Regex empty; |
| 631 | 0 | if (replacePunctuation.isEnabled() && replacePunctuation.isSelected()) |
| 632 | { | |
| 633 | 0 | empty = new com.stevesoft.pat.Regex( |
| 634 | // replace commas and spaces with a semicolon | |
| 635 | "(\\s|[,; ])+", ";"); | |
| 636 | } | |
| 637 | else | |
| 638 | { | |
| 639 | // just turn spaces and semicolons into single semicolons | |
| 640 | 0 | empty = new com.stevesoft.pat.Regex("(\\s|[; ])+", ";"); |
| 641 | } | |
| 642 | 0 | textArea.setText(empty.replaceAll(textArea.getText())); |
| 643 | // see if there's anthing to search with | |
| 644 | 0 | if (!new com.stevesoft.pat.Regex("[A-Za-z0-9_.]") |
| 645 | .search(textArea.getText())) | |
| 646 | { | |
| 647 | 0 | error += "Please enter a (semi-colon separated list of) database id(s)"; |
| 648 | } | |
| 649 | 0 | if (error.length() > 0) |
| 650 | { | |
| 651 | 0 | showErrorMessage(error); |
| 652 | 0 | resetDialog(); |
| 653 | 0 | return; |
| 654 | } | |
| 655 | // TODO: Refactor to GUI independent code and write tests. | |
| 656 | // indicate if successive sources should be merged into one alignment. | |
| 657 | 0 | boolean addToLast = false; |
| 658 | 0 | List<String> aresultq = new ArrayList<>(); |
| 659 | 0 | List<String> presultTitle = new ArrayList<>(); |
| 660 | 0 | List<AlignmentI> presult = new ArrayList<>(); |
| 661 | 0 | List<AlignmentI> aresult = new ArrayList<>(); |
| 662 | 0 | Iterator<DbSourceProxy> proxies = database.getSelectedSources() |
| 663 | .iterator(); | |
| 664 | 0 | String[] qries; |
| 665 | 0 | List<String> nextFetch = Arrays |
| 666 | .asList(qries = textArea.getText().split(";")); | |
| 667 | 0 | Iterator<String> en = Arrays.asList(new String[0]).iterator(); |
| 668 | 0 | int nqueries = qries.length; |
| 669 | ||
| 670 | 0 | FeatureSettingsModelI preferredFeatureColours = null; |
| 671 | 0 | while (proxies.hasNext() && (en.hasNext() || nextFetch.size() > 0)) |
| 672 | { | |
| 673 | 0 | if (!en.hasNext() && nextFetch.size() > 0) |
| 674 | { | |
| 675 | 0 | en = nextFetch.iterator(); |
| 676 | 0 | nqueries = nextFetch.size(); |
| 677 | // save the remaining queries in the original array | |
| 678 | 0 | qries = nextFetch.toArray(new String[nqueries]); |
| 679 | 0 | nextFetch = new ArrayList<>(); |
| 680 | } | |
| 681 | ||
| 682 | 0 | DbSourceProxy proxy = proxies.next(); |
| 683 | 0 | try |
| 684 | { | |
| 685 | // update status | |
| 686 | 0 | guiWindow.setProgressBar(MessageManager.formatMessage( |
| 687 | "status.fetching_sequence_queries_from", new String[] | |
| 688 | { Integer.valueOf(nqueries).toString(), | |
| 689 | proxy.getDbName() }), | |
| 690 | Thread.currentThread().hashCode()); | |
| 691 | 0 | if (proxy.getMaximumQueryCount() == 1) |
| 692 | { | |
| 693 | /* | |
| 694 | * proxy only handles one accession id at a time | |
| 695 | */ | |
| 696 | 0 | while (en.hasNext()) |
| 697 | { | |
| 698 | 0 | String acc = en.next(); |
| 699 | 0 | if (!fetchSingleAccession(proxy, acc, aresultq, aresult)) |
| 700 | { | |
| 701 | 0 | nextFetch.add(acc); |
| 702 | } | |
| 703 | } | |
| 704 | } | |
| 705 | else | |
| 706 | { | |
| 707 | /* | |
| 708 | * proxy can fetch multiple accessions at one time | |
| 709 | */ | |
| 710 | 0 | fetchMultipleAccessions(proxy, en, aresultq, aresult, nextFetch); |
| 711 | } | |
| 712 | } catch (Exception e) | |
| 713 | { | |
| 714 | 0 | showErrorMessage("Error retrieving " + textArea.getText() + " from " |
| 715 | + database.getSelectedItem()); | |
| 716 | // error | |
| 717 | // +="Couldn't retrieve sequences from "+database.getSelectedItem(); | |
| 718 | 0 | System.err.println("Retrieval failed for source ='" |
| 719 | + database.getSelectedItem() + "' and query\n'" | |
| 720 | + textArea.getText() + "'\n"); | |
| 721 | 0 | e.printStackTrace(); |
| 722 | } catch (OutOfMemoryError e) | |
| 723 | { | |
| 724 | 0 | showErrorMessage("Out of Memory when retrieving " |
| 725 | + textArea.getText() + " from " + database.getSelectedItem() | |
| 726 | + "\nPlease see the Jalview FAQ for instructions for increasing the memory available to Jalview.\n"); | |
| 727 | 0 | e.printStackTrace(); |
| 728 | } catch (Error e) | |
| 729 | { | |
| 730 | 0 | showErrorMessage("Serious Error retrieving " + textArea.getText() |
| 731 | + " from " + database.getSelectedItem()); | |
| 732 | 0 | e.printStackTrace(); |
| 733 | } | |
| 734 | ||
| 735 | // Stack results ready for opening in alignment windows | |
| 736 | 0 | if (aresult != null && aresult.size() > 0) |
| 737 | { | |
| 738 | 0 | FeatureSettingsModelI proxyColourScheme = proxy |
| 739 | .getFeatureColourScheme(); | |
| 740 | 0 | if (proxyColourScheme != null) |
| 741 | { | |
| 742 | 0 | preferredFeatureColours = proxyColourScheme; |
| 743 | } | |
| 744 | ||
| 745 | 0 | AlignmentI ar = null; |
| 746 | 0 | if (proxy.isAlignmentSource()) |
| 747 | { | |
| 748 | 0 | addToLast = false; |
| 749 | // new window for each result | |
| 750 | 0 | while (aresult.size() > 0) |
| 751 | { | |
| 752 | 0 | presult.add(aresult.remove(0)); |
| 753 | 0 | presultTitle.add( |
| 754 | aresultq.remove(0) + " " + getDefaultRetrievalTitle()); | |
| 755 | } | |
| 756 | } | |
| 757 | else | |
| 758 | { | |
| 759 | 0 | String titl = null; |
| 760 | 0 | if (addToLast && presult.size() > 0) |
| 761 | { | |
| 762 | 0 | ar = presult.remove(presult.size() - 1); |
| 763 | 0 | titl = presultTitle.remove(presultTitle.size() - 1); |
| 764 | } | |
| 765 | // concatenate all results in one window | |
| 766 | 0 | while (aresult.size() > 0) |
| 767 | { | |
| 768 | 0 | if (ar == null) |
| 769 | { | |
| 770 | 0 | ar = aresult.remove(0); |
| 771 | } | |
| 772 | else | |
| 773 | { | |
| 774 | 0 | ar.append(aresult.remove(0)); |
| 775 | } | |
| 776 | } | |
| 777 | 0 | addToLast = true; |
| 778 | 0 | presult.add(ar); |
| 779 | 0 | presultTitle.add(titl); |
| 780 | } | |
| 781 | } | |
| 782 | 0 | guiWindow.setProgressBar( |
| 783 | MessageManager.getString("status.finshed_querying"), | |
| 784 | Thread.currentThread().hashCode()); | |
| 785 | } | |
| 786 | 0 | guiWindow |
| 787 | .setProgressBar( | |
| 788 | 0 | (presult.size() > 0) |
| 789 | ? MessageManager | |
| 790 | .getString("status.parsing_results") | |
| 791 | : MessageManager.getString("status.processing"), | |
| 792 | Thread.currentThread().hashCode()); | |
| 793 | // process results | |
| 794 | 0 | while (presult.size() > 0) |
| 795 | { | |
| 796 | 0 | parseResult(presult.remove(0), presultTitle.remove(0), null, |
| 797 | preferredFeatureColours); | |
| 798 | } | |
| 799 | // only remove visual delay after we finished parsing. | |
| 800 | 0 | guiWindow.setProgressBar(null, Thread.currentThread().hashCode()); |
| 801 | 0 | if (nextFetch.size() > 0) |
| 802 | { | |
| 803 | 0 | StringBuffer sb = new StringBuffer(); |
| 804 | 0 | sb.append("Didn't retrieve the following " |
| 805 | 0 | + (nextFetch.size() == 1 ? "query" |
| 806 | : nextFetch.size() + " queries") | |
| 807 | + ": \n"); | |
| 808 | 0 | int l = sb.length(), lr = 0; |
| 809 | 0 | for (String s : nextFetch) |
| 810 | { | |
| 811 | 0 | if (l != sb.length()) |
| 812 | { | |
| 813 | 0 | sb.append("; "); |
| 814 | } | |
| 815 | 0 | if (lr - sb.length() > 40) |
| 816 | { | |
| 817 | 0 | sb.append("\n"); |
| 818 | } | |
| 819 | 0 | sb.append(s); |
| 820 | } | |
| 821 | 0 | showErrorMessage(sb.toString()); |
| 822 | } | |
| 823 | 0 | resetDialog(); |
| 824 | } | |
| 825 | ||
| 826 | /** | |
| 827 | * Tries to fetch one or more accession ids from the database proxy | |
| 828 | * | |
| 829 | * @param proxy | |
| 830 | * @param accessions | |
| 831 | * the queries to fetch | |
| 832 | * @param aresultq | |
| 833 | * a successful queries list to add to | |
| 834 | * @param aresult | |
| 835 | * a list of retrieved alignments to add to | |
| 836 | * @param nextFetch | |
| 837 | * failed queries are added to this list | |
| 838 | * @throws Exception | |
| 839 | */ | |
| 840 | 0 | void fetchMultipleAccessions(DbSourceProxy proxy, |
| 841 | Iterator<String> accessions, List<String> aresultq, | |
| 842 | List<AlignmentI> aresult, List<String> nextFetch) throws Exception | |
| 843 | { | |
| 844 | 0 | StringBuilder multiacc = new StringBuilder(); |
| 845 | 0 | List<String> tosend = new ArrayList<>(); |
| 846 | 0 | while (accessions.hasNext()) |
| 847 | { | |
| 848 | 0 | String nel = accessions.next(); |
| 849 | 0 | tosend.add(nel); |
| 850 | 0 | multiacc.append(nel); |
| 851 | 0 | if (accessions.hasNext()) |
| 852 | { | |
| 853 | 0 | multiacc.append(proxy.getAccessionSeparator()); |
| 854 | } | |
| 855 | } | |
| 856 | ||
| 857 | 0 | try |
| 858 | { | |
| 859 | 0 | String query = multiacc.toString(); |
| 860 | 0 | AlignmentI rslt = proxy.getSequenceRecords(query); |
| 861 | 0 | if (rslt == null || rslt.getHeight() == 0) |
| 862 | { | |
| 863 | // no results - pass on all queries to next source | |
| 864 | 0 | nextFetch.addAll(tosend); |
| 865 | } | |
| 866 | else | |
| 867 | { | |
| 868 | 0 | aresultq.add(query); |
| 869 | 0 | aresult.add(rslt); |
| 870 | 0 | if (tosend.size() > 1) |
| 871 | { | |
| 872 | 0 | checkResultForQueries(rslt, tosend, nextFetch, proxy); |
| 873 | } | |
| 874 | } | |
| 875 | } catch (OutOfMemoryError oome) | |
| 876 | { | |
| 877 | 0 | new OOMWarning("fetching " + multiacc + " from " |
| 878 | + database.getSelectedItem(), oome, this); | |
| 879 | } | |
| 880 | } | |
| 881 | ||
| 882 | /** | |
| 883 | * Query for a single accession id via the database proxy | |
| 884 | * | |
| 885 | * @param proxy | |
| 886 | * @param accession | |
| 887 | * @param aresultq | |
| 888 | * a list of successful queries to add to | |
| 889 | * @param aresult | |
| 890 | * a list of retrieved alignments to add to | |
| 891 | * @return true if the fetch was successful, else false | |
| 892 | */ | |
| 893 | 0 | boolean fetchSingleAccession(DbSourceProxy proxy, String accession, |
| 894 | List<String> aresultq, List<AlignmentI> aresult) | |
| 895 | { | |
| 896 | 0 | boolean success = false; |
| 897 | 0 | try |
| 898 | { | |
| 899 | 0 | if (aresult != null) |
| 900 | { | |
| 901 | 0 | try |
| 902 | { | |
| 903 | // give the server a chance to breathe | |
| 904 | 0 | Thread.sleep(5); |
| 905 | } catch (Exception e) | |
| 906 | { | |
| 907 | // | |
| 908 | } | |
| 909 | } | |
| 910 | ||
| 911 | 0 | AlignmentI indres = null; |
| 912 | 0 | try |
| 913 | { | |
| 914 | 0 | indres = proxy.getSequenceRecords(accession); |
| 915 | } catch (OutOfMemoryError oome) | |
| 916 | { | |
| 917 | 0 | new OOMWarning( |
| 918 | "fetching " + accession + " from " + proxy.getDbName(), | |
| 919 | oome, this); | |
| 920 | } | |
| 921 | 0 | if (indres != null) |
| 922 | { | |
| 923 | 0 | aresultq.add(accession); |
| 924 | 0 | aresult.add(indres); |
| 925 | 0 | success = true; |
| 926 | } | |
| 927 | } catch (Exception e) | |
| 928 | { | |
| 929 | 0 | Cache.log.info("Error retrieving " + accession + " from " |
| 930 | + proxy.getDbName(), e); | |
| 931 | } | |
| 932 | 0 | return success; |
| 933 | } | |
| 934 | ||
| 935 | /** | |
| 936 | * Checks which of the queries were successfully retrieved by searching the | |
| 937 | * DBRefs of the retrieved sequences for a match. Any not found are added to | |
| 938 | * the 'nextFetch' list. | |
| 939 | * | |
| 940 | * @param rslt | |
| 941 | * @param queries | |
| 942 | * @param nextFetch | |
| 943 | * @param proxy | |
| 944 | */ | |
| 945 | 0 | void checkResultForQueries(AlignmentI rslt, List<String> queries, |
| 946 | List<String> nextFetch, DbSourceProxy proxy) | |
| 947 | { | |
| 948 | 0 | SequenceI[] rs = rslt.getSequencesArray(); |
| 949 | ||
| 950 | 0 | for (String q : queries) |
| 951 | { | |
| 952 | 0 | DBRefEntry dbr = new DBRefEntry(); |
| 953 | 0 | dbr.setSource(proxy.getDbSource()); |
| 954 | 0 | dbr.setVersion(null); |
| 955 | 0 | String accId = proxy.getAccessionIdFromQuery(q); |
| 956 | 0 | dbr.setAccessionId(accId); |
| 957 | 0 | boolean rfound = false; |
| 958 | 0 | for (int r = 0; r < rs.length; r++) |
| 959 | { | |
| 960 | 0 | if (rs[r] != null) |
| 961 | { | |
| 962 | 0 | List<DBRefEntry> found = DBRefUtils.searchRefs(rs[r].getDBRefs(), |
| 963 | accId); | |
| 964 | 0 | if (!found.isEmpty()) |
| 965 | { | |
| 966 | 0 | rfound = true; |
| 967 | 0 | break; |
| 968 | } | |
| 969 | } | |
| 970 | } | |
| 971 | 0 | if (!rfound) |
| 972 | { | |
| 973 | 0 | nextFetch.add(q); |
| 974 | } | |
| 975 | } | |
| 976 | } | |
| 977 | ||
| 978 | /** | |
| 979 | * | |
| 980 | * @return a standard title for any results retrieved using the currently | |
| 981 | * selected source and settings | |
| 982 | */ | |
| 983 | 0 | public String getDefaultRetrievalTitle() |
| 984 | { | |
| 985 | 0 | return "Retrieved from " + database.getSelectedItem(); |
| 986 | } | |
| 987 | ||
| 988 | 0 | AlignmentI parseResult(AlignmentI al, String title, |
| 989 | FileFormatI currentFileFormat, | |
| 990 | FeatureSettingsModelI preferredFeatureColours) | |
| 991 | { | |
| 992 | ||
| 993 | 0 | if (al != null && al.getHeight() > 0) |
| 994 | { | |
| 995 | 0 | if (title == null) |
| 996 | { | |
| 997 | 0 | title = getDefaultRetrievalTitle(); |
| 998 | } | |
| 999 | 0 | if (alignFrame == null) |
| 1000 | { | |
| 1001 | 0 | AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH, |
| 1002 | AlignFrame.DEFAULT_HEIGHT); | |
| 1003 | 0 | if (currentFileFormat != null) |
| 1004 | { | |
| 1005 | 0 | af.currentFileFormat = currentFileFormat; // WHAT IS THE DEFAULT |
| 1006 | // FORMAT FOR | |
| 1007 | // NON-FormatAdapter Sourced | |
| 1008 | // Alignments? | |
| 1009 | } | |
| 1010 | ||
| 1011 | 0 | List<SequenceI> alsqs = al.getSequences(); |
| 1012 | 0 | synchronized (alsqs) |
| 1013 | { | |
| 1014 | 0 | for (SequenceI sq : alsqs) |
| 1015 | { | |
| 1016 | 0 | if (sq.getFeatures().hasFeatures()) |
| 1017 | { | |
| 1018 | 0 | af.setShowSeqFeatures(true); |
| 1019 | 0 | break; |
| 1020 | } | |
| 1021 | } | |
| 1022 | } | |
| 1023 | ||
| 1024 | 0 | if (preferredFeatureColours != null) |
| 1025 | { | |
| 1026 | 0 | af.getViewport().applyFeaturesStyle(preferredFeatureColours); |
| 1027 | } | |
| 1028 | 0 | if (Cache.getDefault("HIDE_INTRONS", true)) |
| 1029 | { | |
| 1030 | 0 | af.hideFeatureColumns(SequenceOntologyI.EXON, false); |
| 1031 | } | |
| 1032 | 0 | if (newAlframes != null) |
| 1033 | { | |
| 1034 | 0 | newAlframes.add(af); |
| 1035 | } | |
| 1036 | 0 | Desktop.addInternalFrame(af, title, AlignFrame.DEFAULT_WIDTH, |
| 1037 | AlignFrame.DEFAULT_HEIGHT); | |
| 1038 | ||
| 1039 | 0 | af.setStatus(MessageManager |
| 1040 | .getString("label.successfully_pasted_alignment_file")); | |
| 1041 | ||
| 1042 | 0 | try |
| 1043 | { | |
| 1044 | 0 | af.setMaximum(Cache.getDefault("SHOW_FULLSCREEN", false)); |
| 1045 | } catch (Exception ex) | |
| 1046 | { | |
| 1047 | } | |
| 1048 | } | |
| 1049 | else | |
| 1050 | { | |
| 1051 | 0 | alignFrame.viewport.addAlignment(al, title); |
| 1052 | } | |
| 1053 | } | |
| 1054 | 0 | return al; |
| 1055 | } | |
| 1056 | ||
| 1057 | 0 | void showErrorMessage(final String error) |
| 1058 | { | |
| 1059 | 0 | resetDialog(); |
| 1060 | 0 | javax.swing.SwingUtilities.invokeLater(new Runnable() |
| 1061 | { | |
| 1062 | 0 | @Override |
| 1063 | public void run() | |
| 1064 | { | |
| 1065 | 0 | JvOptionPane.showInternalMessageDialog(Desktop.desktop, error, |
| 1066 | MessageManager.getString("label.error_retrieving_data"), | |
| 1067 | JvOptionPane.WARNING_MESSAGE); | |
| 1068 | } | |
| 1069 | }); | |
| 1070 | } | |
| 1071 | ||
| 1072 | 0 | public IProgressIndicator getProgressIndicator() |
| 1073 | { | |
| 1074 | 0 | return progressIndicator; |
| 1075 | } | |
| 1076 | ||
| 1077 | 0 | public void setProgressIndicator(IProgressIndicator progressIndicator) |
| 1078 | { | |
| 1079 | 0 | this.progressIndicator = progressIndicator; |
| 1080 | } | |
| 1081 | ||
| 1082 | /** | |
| 1083 | * Make this panel visible (after a selection has been made in the database | |
| 1084 | * chooser) | |
| 1085 | */ | |
| 1086 | 0 | void showPanel() |
| 1087 | { | |
| 1088 | 0 | frame.setVisible(true); |
| 1089 | } | |
| 1090 | ||
| 1091 | /** | |
| 1092 | * Hide this panel (on clicking the database button to open the database | |
| 1093 | * chooser) | |
| 1094 | */ | |
| 1095 | 0 | void hidePanel() |
| 1096 | { | |
| 1097 | 0 | frame.setVisible(false); |
| 1098 | } | |
| 1099 | ||
| 1100 | 0 | public void setDatabaseChooserVisible(boolean b) |
| 1101 | { | |
| 1102 | 0 | databaseButt.setVisible(b); |
| 1103 | } | |
| 1104 | } |