See more

See more

See more

ScaleRenderer AlignmentAnnotationUtils Conservation MSFfile ScoreMatrixFile Rna StringUtils JmolCommands AlignmentUtils GffHelperBase FeatureAttributes.AttributeData FeatureColourFinder CigarBase PileUpfile ExonerateHelper ColorUtils Grouping DnaUtils AtomSpecModel HiddenSequences

See more

1.	0.2861145428.6%	jalview.gui 7533
2.	0.7280469572.8%	jalview.datamodel 2728
3.	0.518810951.9%	jalview.io 2685
4.	0.6422828464.2%	jalview.schemabinding.version2.descriptors 2017
5.	0.3884476438.8%	jalview.schemabinding.version2 1825

1.	0.692024569.2%	Jalview2XML 721
2.	0.2727640627.3%	AlignFrame 647
3.	0.7050730670.5%	AlignmentViewport 410
4.	0.4749744547.5%	AnnotationRenderer 384
5.	0.3236092332.4%	Desktop 384

1.	0.00%	RestJobThread.realiseResults(boolean) : void 57
2.	0.00%	VamsasAppDatastore.storeVAMSAS(AlignViewport,String) : boolean 57
3.	0.00%	VamsasAppDatastore.updateToJalview() : int 50
4.	0.00%	GPreferences.initVisualTab() : JPanel 2
5.	0.00%	SeqPanel.editSequence(boolean,boolean,int) : void 79
6.	0.00%	AlignFrame.paste(boolean) : void 47
7.	0.00%	Jalview2XML_V1.LoadFromObject(JalviewModel,String) : AlignFrame 32
8.	0.00%	Preferences.Preferences() 12
9.	0.00%	CBZip2InputStream.getAndMoveToFrontDecode() : void 24
10.	0.00%	SimpleBlastFile.parse() : void 43
11.	0.00%	VamsasAppDatastore.getjAlignmentAnnotation(jalview.datamodel.AlignmentI,uk.ac.vamsas.objects.core.RangeAnnotation) : jalview.datamodel.AlignmentAnnotation 43
12.	0.00%	GroupUrlLink.makeUrlsIf(boolean,Hashtable,boolean) : Object[] 42
13.	0.00%	AlignmentView.getUpdatedView(SequenceI[][],AlignmentOrder[],char) : Object[] 38
14.	0.00%	JalviewLite.selectIn(AlignFrame,String,String,String) : void 37
15.	0.00%	JalviewChimeraBinding.superposeStructures(AlignmentI[],int[],HiddenColumns[]) : String 31
16.	0.00%	VamsasApplication.handleMessage(Message) : void 37
17.	0.00%	AADisorderClient.updateResultAnnotation(boolean) : void 33
18.	0.00%	DBRefFetcher.transferReferences(Vector<SequenceI>,String,AlignmentI,boolean,List<String>) : boolean 30
19.	0.00%	SequenceFetcher.run() : void 32
20.	0.00%	AlignFrame.keyPressed(KeyEvent) : void 50