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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT

Package jalview.io

 

Code metrics

3,214
6,400
646
58
50
21,876
15,147
2,685
0.42
9.91
11.14
4.16
Package
jalview.io jalview.io 50.0 50 4.156347 4.16 4937.0 4,937 0.5188109
0.518810951.9%
 
Class
AlignmentProperties AlignmentProperties 5.0 5 3.2 3.2 76.0 76 0.0
0.00%
DBRefFile DBRefFile 2.0 2 1.0 1 3.0 3 0.0
0.00%
HtmlFile HtmlFile 15.0 15 1.4 1.4 66.0 66 0.0
0.00%
HtmlSvgOutput HtmlSvgOutput 12.0 12 2.25 2.25 144.0 144 0.0
0.00%
InputStreamParser InputStreamParser 2.0 2 1.0 1 10.0 10 0.0
0.00%
JPredFile JPredFile 11.0 11 4.0 4 178.0 178 0.0
0.00%
JSONFile.JSONExportSettings JSONFile.JSONExportSettings 10.0 10 1.0 1 20.0 20 0.0
0.00%
JnetAnnotationMaker JnetAnnotationMaker 2.0 2 21.0 21 124.0 124 0.0
0.00%
ModellerDescription.resCode ModellerDescription.resCode 2.0 2 1.0 1 6.0 6 0.0
0.00%
SimpleBlastFile SimpleBlastFile 6.0 6 8.0 8 171.0 171 0.0
0.00%
VamsasAppDatastore VamsasAppDatastore 51.0 51 7.2941175 7.29 1489.0 1,489 0.0
0.00%
WSWUBlastClient WSWUBlastClient 3.0 3 4.6666665 4.67 73.0 73 0.0
0.00%
WSWUBlastClient.BlastThread WSWUBlastClient.BlastThread 3.0 3 2.3333333 2.33 44.0 44 0.0
0.00%
WSWUBlastClient.ImageTwirler WSWUBlastClient.ImageTwirler 2.0 2 3.5 3.5 24.0 24 0.0
0.00%
ModellerDescription ModellerDescription 14.0 14 4.785714 4.79 182.0 182 0.14553991
0.1455399114.6%
AMSAFile AMSAFile 4.0 4 3.5 3.5 43.0 43 0.18867925
0.1886792518.9%
FormatAdapter FormatAdapter 16.0 16 1.75 1.75 78.0 78 0.19587629
0.1958762919.6%
PDBFeatureSettings PDBFeatureSettings 4.0 4 2.25 2.25 22.0 22 0.21428572
0.2142857221.4%
HTMLOutput HTMLOutput 11.0 11 2.4545455 2.45 72.0 72 0.23404256
0.2340425623.4%
AppletFormatAdapter AppletFormatAdapter 18.0 18 4.6666665 4.67 229.0 229 0.2798742
0.279874228%
JalviewFileChooser JalviewFileChooser 17.0 17 2.5882354 2.59 104.0 104 0.3375796
0.337579633.8%
BioJsHTMLOutput BioJsHTMLOutput 14.0 14 2.5 2.5 53.0 53 0.576
0.57657.6%
FileParse FileParse 31.0 31 2.483871 2.48 113.0 113 0.57992566
0.5799256658%
NewickFile NewickFile 26.0 26 4.3076925 4.31 182.0 182 0.5825688
0.582568858.3%
FileLoader FileLoader 18.0 18 3.9444444 3.94 114.0 114 0.5854545
0.585454558.5%
FastaFile FastaFile 8.0 8 3.625 3.62 42.0 42 0.6146789
0.614678961.5%
FileFormat FileFormat 53.0 53 1.018868 1.02 44.0 44 0.62393165
0.6239316562.4%
RnamlFile RnamlFile 9.0 9 2.6666667 2.67 29.0 29 0.65882355
0.6588235565.9%
PIRFile PIRFile 5.0 5 4.8 4.8 35.0 35 0.6759259
0.675925967.6%
JalviewFileFilter JalviewFileFilter 11.0 11 2.5454545 2.55 25.0 25 0.6987952
0.698795269.9%
TCoffeeScoreFile TCoffeeScoreFile 14.0 14 5.0 5 72.0 72 0.71984434
0.7198443472%
AnnotationFile AnnotationFile 27.0 27 11.222222 11.22 336.0 336 0.7250409
0.725040972.5%
Jalview2xmlBase Jalview2xmlBase 5.0 5 2.0 2 7.0 7 0.7407407
0.740740774.1%
StructureFile StructureFile 32.0 32 1.9375 1.94 50.0 50 0.74358976
0.7435897674.4%
StockholmFile StockholmFile 16.0 16 9.75 9.75 174.0 174 0.75142854
0.7514285475.1%
BLCFile BLCFile 6.0 6 5.6666665 5.67 32.0 32 0.7557252
0.755725275.6%
IdentifyFile IdentifyFile 9.0 9 9.333333 9.33 69.0 69 0.7570422
0.757042275.7%
FeaturesFile FeaturesFile 25.0 25 5.8 5.8 129.0 129 0.7760417
0.776041777.6%
ClustalFile ClustalFile 6.0 6 6.1666665 6.17 30.0 30 0.8013245
0.801324580.1%
AlignFile AlignFile 25.0 25 1.68 1.68 25.0 25 0.8015873
0.801587380.2%
SequenceAnnotationReport SequenceAnnotationReport 12.0 12 6.0 6 50.0 50 0.80544746
0.8054474680.5%
PhylipFile PhylipFile 7.0 7 3.7142856 3.71 21.0 21 0.8108108
0.810810881.1%
PfamFile PfamFile 6.0 6 4.1666665 4.17 17.0 17 0.82828283
0.8282828382.8%
JSONFile JSONFile 25.0 25 4.36 4.36 78.0 78 0.8315335
0.831533583.2%
TCoffeeScoreFile.Header TCoffeeScoreFile.Header 2.0 2 1.5 1.5 1.0 1 0.8333333
0.833333383.3%
JalviewFileChooser.RecentlyOpened JalviewFileChooser.RecentlyOpened 3.0 3 2.0 2 5.0 5 0.8484849
0.848484984.8%
JalviewFileView JalviewFileView 6.0 6 2.6666667 2.67 9.0 9 0.8548387
0.854838785.5%
MSFfile MSFfile 6.0 6 8.166667 8.17 22.0 22 0.8967136
0.896713689.7%
PileUpfile PileUpfile 4.0 4 5.0 5 7.0 7 0.9222222
0.922222292.2%
ScoreMatrixFile ScoreMatrixFile 9.0 9 5.7777777 5.78 8.0 8 0.959596
0.95959696%
AnnotationFile.ViewDef AnnotationFile.ViewDef 1.0 1 1.0 1 0.0 0 1.0
1.0100%
FileFormatException FileFormatException 1.0 1 1.0 1 0.0 0 1.0
1.0100%
FileFormats FileFormats 11.0 11 1.6363636 1.64 0.0 0 1.0
1.0100%
TCoffeeScoreFile.Block TCoffeeScoreFile.Block 3.0 3 1.0 1 0.0 0 1.0
1.0100%
This package contains 4 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.