Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
JalviewFileFilter	30	44	28	25	0.698795269.9%	Show methods

Class JalviewFileFilter

Class JalviewFileFilter	Line # 30	Total Statements 44	Complexity 28	Uncovered Elements 25	TOTAL Coverage 0.698795269.9%
JalviewFileFilter(String,String)   JalviewFileFilter(String,String)	4242	4.04	2.02	0.00	1.0 1.0100%
JalviewFileFilter(String[])   JalviewFileFilter(String[])	5454	1.01	1.01	1.01	0.0 0.00%
JalviewFileFilter(String[],String)   JalviewFileFilter(String[],String)	5959	4.04	3.03	8.08	0.0 0.00%
getAcceptableExtension() : String   getAcceptableExtension() : String	7373	1.01	1.01	1.01	0.0 0.00%
accept(File) : boolean   accept(File) : boolean	7979	7.07	5.05	3.03	0.7692308 0.769230876.9%
getExtension(File) : String   getExtension(File) : String	9999	7.07	4.04	1.01	0.90909094 0.9090909490.9%
addExtension(String) : void   addExtension(String) : void	117117	4.04	2.02	0.00	1.0 1.0100%
getDescription() : String   getDescription() : String	128128	11.011	7.07	5.05	0.7619048 0.761904876.2%
setDescription(String) : void   setDescription(String) : void	161161	2.02	1.01	0.00	1.0 1.0100%
setExtensionListInDescription(boolean) : void   setExtensionListInDescription(boolean) : void	167167	2.02	1.01	2.02	0.0 0.00%
isExtensionListInDescription() : boolean   isExtensionListInDescription() : boolean	173173	1.01	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.6987952	jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView	1PASS
	0.6987952	jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps	1PASS
	0.6987952	jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import java.io.File;
24		import java.util.Enumeration;
25		import java.util.Hashtable;
26		import java.util.StringTokenizer;
27
28		import javax.swing.filechooser.FileFilter;
29
		69.9% Uncovered Elements: 25 (83) Complexity: 28 Complexity Density: 0.64
30		public class JalviewFileFilter extends FileFilter
31		{
32		public static Hashtable suffixHash = new Hashtable();
33
34		private Hashtable filters = null;
35
36		private String description = "no description";
37
38		private String fullDescription = "full description";
39
40		private boolean useExtensionsInDescription = true;
41
		100% Uncovered Elements: 0 (6) Complexity: 2 Complexity Density: 0.5
42	187	public JalviewFileFilter(String extension, String description)...
43		{
44	187	StringTokenizer st = new StringTokenizer(extension, ",");
45
46	462	while (st.hasMoreElements())
47		{
48	275	addExtension(st.nextToken().trim());
49		}
50
51	187	setDescription(description);
52		}
53
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
54	0	public JalviewFileFilter(String[] filts)...
55		{
56	0	this(filts, null);
57		}
58
		0% Uncovered Elements: 8 (8) Complexity: 3 Complexity Density: 0.75
59	0	public JalviewFileFilter(String[] filts, String description)...
60		{
61	0	for (int i = 0; i < filts.length; i++)
62		{
63		// add filters one by one
64	0	addExtension(filts[i]);
65		}
66
67	0	if (description != null)
68		{
69	0	setDescription(description);
70		}
71		}
72
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
73	0	public String getAcceptableExtension()...
74		{
75	0	return filters.keys().nextElement().toString();
76		}
77
78		// takes account of the fact that database is a directory
		76.9% Uncovered Elements: 3 (13) Complexity: 5 Complexity Density: 0.71
79	72	public boolean accept(File f)...
80		{
81	72	if (f != null)
82		{
83	72	String extension = getExtension(f);
84
85	72	if (f.isDirectory())
86		{
87	60	return true;
88		}
89
90	12	if ((extension != null) && (filters.get(getExtension(f)) != null))
91		{
92	0	return true;
93		}
94		}
95
96	12	return false;
97		}
98
		90.9% Uncovered Elements: 1 (11) Complexity: 4 Complexity Density: 0.57
99	84	public String getExtension(File f)...
100		{
101	84	if (f != null)
102		{
103	84	String filename = f.getName();
104	84	int i = filename.lastIndexOf('.');
105
106	84	if ((i > 0) && (i < (filename.length() - 1)))
107		{
108	36	return filename.substring(i + 1).toLowerCase();
109		}
110
111	48	;
112		}
113
114	48	return "";
115		}
116
		100% Uncovered Elements: 0 (6) Complexity: 2 Complexity Density: 0.5
117	275	public void addExtension(String extension)...
118		{
119	275	if (filters == null)
120		{
121	187	filters = new Hashtable(5);
122		}
123
124	275	filters.put(extension.toLowerCase(), this);
125	275	fullDescription = null;
126		}
127
		76.2% Uncovered Elements: 5 (21) Complexity: 7 Complexity Density: 0.64
128	187	public String getDescription()...
129		{
130	187	if (fullDescription == null)
131		{
132	187	if ((description == null) || isExtensionListInDescription())
133		{
134	187	fullDescription = (description == null) ? "("
135		: (description + " (");
136
137		// build the description from the extension list
138	187	Enumeration extensions = filters.keys();
139
140	187	if (extensions != null)
141		{
142	187	fullDescription += ("." + (String) extensions.nextElement());
143
144	275	while (extensions.hasMoreElements())
145		{
146	88	fullDescription += (", " + (String) extensions.nextElement());
147		}
148		}
149
150	187	fullDescription += ")";
151		}
152		else
153		{
154	0	fullDescription = description;
155		}
156		}
157
158	187	return fullDescription;
159		}
160
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
161	187	public void setDescription(String description)...
162		{
163	187	this.description = description;
164	187	fullDescription = null;
165		}
166
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
167	0	public void setExtensionListInDescription(boolean b)...
168		{
169	0	useExtensionsInDescription = b;
170	0	fullDescription = null;
171		}
172
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
173	187	public boolean isExtensionListInDescription()...
174		{
175	187	return useExtensionsInDescription;
176		}
177		}