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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.structures.models.AAStructureBindingModel.SuperposeData
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.structure.StructureMappingcommandSet
jalview.structure.StructureMappingcommandSet
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9772727597.7%
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.8694581486.9%
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jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.datamodel.Profiles
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0.833333383.3%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.datamodel.features.RangeComparator
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jalview.ext.jmol.JmolCommands
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0.7575%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.structures.models.SequenceStructureBindingModel
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0.7575%
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jalview.ws.SequenceFetcher
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jalview.structures.models.AAStructureBindingModel
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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jalview.gui.JalviewAppender
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0.770%
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jalview.io.JalviewFileFilter
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0.698795269.9%
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jalview.jbgui.GStructureViewer
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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0.6697247667%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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jalview.datamodel.PDBEntry
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0.6050955760.5%
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jalview.renderer.ResidueColourFinder
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jalview.ext.jmol.JmolParser
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0.576923157.7%
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jalview.jbgui.GAlignFrame
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0.574167557.4%
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jalview.workers.ConservationThread
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.util.CaseInsensitiveString
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.5542168655.4%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.53653.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.5357142753.6%
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mc_view.PDBChain
mc_view.PDBChain
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0.5179640751.8%
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jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.490909149.1%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.4881889848.8%
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jalview.gui.AppJmolBinding
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0.485294148.5%
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jalview.datamodel.SearchResults
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jalview.structure.StructureImportSettings
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jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.workers.AlignCalcManager
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.448979644.9%
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jalview.ext.ensembl.EnsemblGenomes
jalview.ext.ensembl.EnsemblGenomes
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0.4444444544.4%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.4305555543.1%
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jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.4187082441.9%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.4153846241.5%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.409090940.9%
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jalview.schemes.ResidueColourScheme
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.4035087840.4%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3919089739.2%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3814756638.1%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.3712121237.1%
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.353790635.4%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.3503649535%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.3412698534.1%
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jalview.datamodel.features.FeatureStore.SearchCriterion
jalview.datamodel.features.FeatureStore.SearchCriterion
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0.3333333433.3%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.331180833.1%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3267326732.7%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.3205128332.1%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.3187531.9%
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jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.3142857331.4%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.3140939531.4%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3039513830.4%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.2967479529.7%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2953367829.5%
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jalview.util.Comparison
jalview.util.Comparison
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.285974528.6%
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jalview.ws.dbsources.RfamSeed
jalview.ws.dbsources.RfamSeed
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0.285714328.6%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.285714328.6%
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jalview.datamodel.DBRefSource
jalview.datamodel.DBRefSource
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.2852112728.5%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2748091527.5%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.2619047826.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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0.2439024424.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2424763624.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.241379324.1%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2396694324%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.2307692323.1%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.2307692323.1%
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jalview.util.Platform
jalview.util.Platform
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0.2272727322.7%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2202380922%
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.2165605121.7%
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jalview.datamodel.SearchResults.Match
jalview.datamodel.SearchResults.Match
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0.2162162221.6%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.2139037421.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.2135922321.4%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2063808620.6%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.structure.AtomSpec
jalview.structure.AtomSpec
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0.203703720.4%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.1963190119.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.1895910819%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.1818181918.2%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1803278618%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.1773049717.7%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.176470617.6%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1666666716.7%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.1538461615.4%
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jalview.util.dialogrunner.RunResponse
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0.1538461615.4%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.1458333314.6%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1403508814%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.138405513.8%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.12363636512.4%
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jalview.gui.Console
jalview.gui.Console
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0.1234177212.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1219512212.2%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.1136363711.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1121076211.2%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.ws.sifts.SiftsSettings
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
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jalview.renderer.ResidueShader
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0.10434782510.4%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.10256410410.3%
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jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.089385478.9%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.087516968.8%
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jalview.schemes.ColourSchemes
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0.085106388.5%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.080402018%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.073770497.4%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.073260087.3%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.066558446.7%
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jalview.bin.Cache
jalview.bin.Cache
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0.065015486.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.0649895156.5%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.063829796.4%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.util.MapList
jalview.util.MapList
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0.054101225.4%
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jalview.util.dialogrunner.Response
jalview.util.dialogrunner.Response
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0.051724145.2%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0448717964.5%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.0431372564.3%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0353773573.5%
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|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0322580643.2%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0314516133.1%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.029556653%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0289855082.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0210970472.1%
|
|
|
jalview.util.dialogrunner.DialogRunner
jalview.util.dialogrunner.DialogRunner
|
0.0183486231.8%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.016750421.7%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0167364011.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0154109591.5%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0152671761.5%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.01249081551.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0117416831.2%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0100502511%
|
|
|
jalview.jbgui.GDesktop
jalview.jbgui.GDesktop
|
0.0096153851%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0077821010.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0041322310.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.0040858020.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
9.4831677E-40.1%
|
|
