Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
PDBFeatureSettings	31	14	9	22	0.2142857221.4%	Show methods

Class PDBFeatureSettings

Class PDBFeatureSettings	Line # 31	Total Statements 14	Complexity 9	Uncovered Elements 22	TOTAL Coverage 0.2142857221.4%
isFeatureDisplayed(String) : boolean   isFeatureDisplayed(String) : boolean	3838	1.01	1.01	0.00	1.0 1.0100%
getColour() : Color   getColour() : Color	5353	1.01	1.01	1.01	0.0 0.00%
getFeatureColour(String) : FeatureColourI   getFeatureColour(String) : FeatureColourI	4545	3.03	2.02	2.02	0.6 0.660%
compare(String,String) : int   compare(String,String) : int	6666	9.09	5.05	17.017	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.21428572	jalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntry	1PASS
	0.21428572	jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation	1PASS
	0.21428572	jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol	1PASS
	0.21428572	jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import jalview.api.FeatureColourI;
24		import jalview.schemes.FeatureColour;
25		import jalview.schemes.FeatureSettingsAdapter;
26
27		import java.awt.Color;
28
29		import mc_view.PDBChain;
30
		21.4% Uncovered Elements: 22 (28) Complexity: 9 Complexity Density: 0.64
31		public class PDBFeatureSettings extends FeatureSettingsAdapter
32		{
33		// TODO find one central place to define feature names
34		private static final String FEATURE_INSERTION = "INSERTION";
35
36		private static final String FEATURE_RES_NUM = PDBChain.RESNUM_FEATURE;
37
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
38	10	@Override...
39		public boolean isFeatureDisplayed(String type)
40		{
41	10	return type.equalsIgnoreCase(FEATURE_INSERTION)
42		|| type.equalsIgnoreCase(FEATURE_RES_NUM);
43		}
44
		60% Uncovered Elements: 2 (5) Complexity: 2 Complexity Density: 0.67
45	10	@Override...
46		public FeatureColourI getFeatureColour(String type)
47		{
48	10	if (type.equalsIgnoreCase(FEATURE_INSERTION))
49		{
50	0	return new FeatureColour()
51		{
52
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
53	0	@Override...
54		public Color getColour()
55		{
56	0	return Color.RED;
57		}
58		};
59		}
60	10	return null;
61		}
62
63		/**
64		* Order to render insertion after ResNum
65		*/
		0% Uncovered Elements: 17 (17) Complexity: 5 Complexity Density: 0.56
66	0	@Override...
67		public int compare(String feature1, String feature2)
68		{
69	0	if (feature1.equalsIgnoreCase(FEATURE_INSERTION))
70		{
71	0	return +1;
72		}
73	0	if (feature2.equalsIgnoreCase(FEATURE_INSERTION))
74		{
75	0	return -1;
76		}
77	0	if (feature1.equalsIgnoreCase(FEATURE_RES_NUM))
78		{
79	0	return +1;
80		}
81	0	if (feature2.equalsIgnoreCase(FEATURE_RES_NUM))
82		{
83	0	return -1;
84		}
85	0	return 0;
86		}
87		}