|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.structure.StructureMappingcommandSet
jalview.structure.StructureMappingcommandSet
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9772727597.7%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.8694581486.9%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.datamodel.features.RangeComparator
jalview.datamodel.features.RangeComparator
|
0.764705976.5%
|
|
|
jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
|
0.7575%
|
|
|
jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.701030970.1%
|
|
|
jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.697674469.8%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.6774193667.7%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.6050955760.5%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.595238159.5%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.574167557.4%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.5674676356.7%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.5357142753.6%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.5179640751.8%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.514705951.5%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.5064102450.6%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
|
|
jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.4838709548.4%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.466101746.6%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.4254545642.5%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.4153846241.5%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.404761940.5%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3712121237.1%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3685300436.9%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.3636%
|
|
|
jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.3541666635.4%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.353790635.4%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.3503649535%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.343358434.3%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3412698534.1%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.338068233.8%
|
|
|
jalview.datamodel.features.FeatureStore.SearchCriterion
jalview.datamodel.features.FeatureStore.SearchCriterion
|
0.3333333433.3%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.326530632.7%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.3256457432.6%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3187531.9%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.3142857331.4%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3140939531.4%
|
|
|
jalview.gui.JalviewAppender
jalview.gui.JalviewAppender
|
0.330%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.2967479529.7%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.293785329.4%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2917933229.2%
|
|
|
jalview.datamodel.DBRefSource
jalview.datamodel.DBRefSource
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.2852112728.5%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.2619047826.2%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.259165625.9%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.25388625.4%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.241379324.1%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2396694324%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.2314285823.1%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.2307692323.1%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.2295081923%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.2272727322.7%
|
|
|
jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
|
0.2142857221.4%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.2139037421.4%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2127659621.3%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.2110091721.1%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2020636320.2%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1895910819%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1803278618%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.1773049717.7%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.176470617.6%
|
|
|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.1759465517.6%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1679389316.8%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1666666716.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1485543414.9%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.1333333413.3%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.1325301213.3%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1287128812.9%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1237113412.4%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.1234177212.3%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.1212%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1156462611.6%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1136363711.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.1121076211.2%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1111111111.1%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.1111111111.1%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.10256410410.3%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.098340759.8%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.092024549.2%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.089385478.9%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.085106388.5%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0834464068.3%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.080402018%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.065015486.5%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.0649895156.5%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0608695636.1%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.054101225.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.0487804864.9%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.043831174.4%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0322580643.2%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0306603783.1%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.029556653%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0270270282.7%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0235294122.4%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.0212765952.1%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0210970472.1%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.018315021.8%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0177419351.8%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.016750421.7%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0167364011.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0154109591.5%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0152671761.5%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.01024590151%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0100502511%
|
|
|
jalview.jbgui.GDesktop
jalview.jbgui.GDesktop
|
0.0096153851%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0080822920.8%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0077821010.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0041322310.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.0040858020.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
9.4831677E-40.1%
|
|
