Test testJalviewProjectRelocationAnnotation

Test	Status	Start time	Time (seconds)	Message
testJalviewProjectRelocationAnnotation	1PASS	31 Oct 15:14:29	0.927

Target Class	Coverage contributed by testJalviewProjectRelocationAnnotation
jalview.gui.Jalview2XML.JvAnnotRow   jalview.gui.Jalview2XML.JvAnnotRow	1.0100%
jalview.ws.WSClient   jalview.ws.WSClient	1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts	1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel	0.9772727597.7%
jalview.schemabinding.version2.descriptors.JalviewModelDescriptor   jalview.schemabinding.version2.descriptors.JalviewModelDescriptor	0.895652289.6%
jalview.analysis.Conservation   jalview.analysis.Conservation	0.874384287.4%
mc_view.Residue   mc_view.Residue	0.8461538684.6%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle	0.841463484.1%
jalview.schemabinding.version2.descriptors.PropertyDescriptor   jalview.schemabinding.version2.descriptors.PropertyDescriptor	0.833333383.3%
jalview.datamodel.Profiles   jalview.datamodel.Profiles	0.833333383.3%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance	0.8295454483%
jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor   jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor	0.821052682.1%
jalview.schemabinding.version2.descriptors.DBRefDescriptor   jalview.schemabinding.version2.descriptors.DBRefDescriptor	0.7981651479.8%
jalview.schemabinding.version2.descriptors.PdbentryItemDescriptor   jalview.schemabinding.version2.descriptors.PdbentryItemDescriptor	0.7959183579.6%
jalview.schemabinding.version2.descriptors.SequenceDescriptor   jalview.schemabinding.version2.descriptors.SequenceDescriptor	0.791666779.2%
jalview.schemabinding.version2.descriptors.GroupDescriptor   jalview.schemabinding.version2.descriptors.GroupDescriptor	0.787578.8%
jalview.gui.ItemsRenderer   jalview.gui.ItemsRenderer	0.777777877.8%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet	0.7727272577.3%
jalview.datamodel.features.RangeComparator   jalview.datamodel.features.RangeComparator	0.764705976.5%
jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor   jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor	0.7565217675.7%
jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor   jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor	0.7534246475.3%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport	0.7575%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory	0.7575%
jalview.schemabinding.version2.descriptors.PdbentryDescriptor   jalview.schemabinding.version2.descriptors.PdbentryDescriptor	0.7575%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher	0.7435897674.4%
jalview.schemabinding.version2.descriptors.FeatureDescriptor   jalview.schemabinding.version2.descriptors.FeatureDescriptor	0.7350427573.5%
jalview.schemabinding.version2.descriptors.AnnotationDescriptor   jalview.schemabinding.version2.descriptors.AnnotationDescriptor	0.7337559573.4%
jalview.schemabinding.version2.descriptors.FeaturesDescriptor   jalview.schemabinding.version2.descriptors.FeaturesDescriptor	0.7272727572.7%
jalview.schemabinding.version2.descriptors.VamsasModelDescriptor   jalview.schemabinding.version2.descriptors.VamsasModelDescriptor	0.7272727572.7%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer	0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper	0.7142857371.4%
jalview.schemabinding.version2.descriptors.SequenceSetDescriptor   jalview.schemabinding.version2.descriptors.SequenceSetDescriptor	0.7125748471.3%
jalview.schemabinding.version2.descriptors.ViewportDescriptor   jalview.schemabinding.version2.descriptors.ViewportDescriptor	0.7088607570.9%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread	0.701030970.1%
jalview.datamodel.Profile   jalview.datamodel.Profile	0.6774193667.7%
jalview.schemabinding.version2.descriptors.JSeqDescriptor   jalview.schemabinding.version2.descriptors.JSeqDescriptor	0.668810366.9%
jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor   jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor	0.6604938566%
jalview.schemabinding.version2.descriptors.PdbidsDescriptor   jalview.schemabinding.version2.descriptors.PdbidsDescriptor	0.6464%
jalview.schemabinding.version2.AnnotationElement   jalview.schemabinding.version2.AnnotationElement	0.636363663.6%
jalview.schemabinding.version2.descriptors.SettingDescriptor   jalview.schemabinding.version2.descriptors.SettingDescriptor	0.63551463.6%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry	0.630573363.1%
jalview.schemabinding.version2.descriptors.VAMSASDescriptor   jalview.schemabinding.version2.descriptors.VAMSASDescriptor	0.6153846461.5%
jalview.gui.JalviewDialog   jalview.gui.JalviewDialog	0.609756161%
jalview.schemabinding.version2.Viewport   jalview.schemabinding.version2.Viewport	0.5794573457.9%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame	0.574167557.4%
jalview.util.MessageManager   jalview.util.MessageManager	0.571428657.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread	0.568965556.9%
jalview.schemabinding.version2.SequenceType   jalview.schemabinding.version2.SequenceType	0.562556.2%
jalview.schemabinding.version2.JalviewModel   jalview.schemabinding.version2.JalviewModel	0.562556.2%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser	0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties	0.550%
jalview.schemabinding.version2.DBRef   jalview.schemabinding.version2.DBRef	0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme	0.550%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter	0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme	0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme	0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme	0.550%
mc_view.Bond   mc_view.Bond	0.550%
jalview.schemabinding.version2.Annotation   jalview.schemabinding.version2.Annotation	0.48616648.6%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings	0.4838709548.4%
jalview.gui.SplashScreen.SplashImage   jalview.gui.SplashScreen.SplashImage	0.4705882447.1%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager	0.4645161346.5%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient	0.448979644.9%
jalview.io.FileLoader   jalview.io.FileLoader	0.4472727244.7%
jalview.ext.ensembl.EnsemblGenomes   jalview.ext.ensembl.EnsemblGenomes	0.4444444544.4%
jalview.schemabinding.version2.Feature   jalview.schemabinding.version2.Feature	0.4432989744.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper	0.4322033843.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition	0.4285714342.9%
jalview.schemabinding.version2.Group   jalview.schemabinding.version2.Group	0.4193548341.9%
jalview.schemabinding.version2.Property   jalview.schemabinding.version2.Property	0.4166666641.7%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset	0.409090940.9%
jalview.gui.AlignViewport   jalview.gui.AlignViewport	0.408521340.9%
jalview.gui.Jalview2XML   jalview.gui.Jalview2XML	0.4015337540.2%
jalview.io.FileFormats   jalview.io.FileFormats	0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme	0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme	0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme	0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme	0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme	0.440%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer	0.399606340%
jalview.io.StructureFile   jalview.io.StructureFile	0.384615438.5%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel	0.359039235.9%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme	0.3571428735.7%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport	0.3559759335.6%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount	0.353790635.4%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore	0.3503649535%
jalview.io.AlignFile   jalview.io.AlignFile	0.3333333433.3%
jalview.schemabinding.version2.types.NoValueColour   jalview.schemabinding.version2.types.NoValueColour	0.3333333433.3%
jalview.datamodel.features.FeatureStore.SearchCriterion   jalview.datamodel.features.FeatureStore.SearchCriterion	0.3333333433.3%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation	0.3315436233.2%
jalview.datamodel.Sequence   jalview.datamodel.Sequence	0.321033232.1%
jalview.util.Format   jalview.util.Format	0.3209109632.1%
jalview.io.IdentifyFile   jalview.io.IdentifyFile	0.3204225332%
mc_view.PDBChain   mc_view.PDBChain	0.320359332%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures	0.3187531.9%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription	0.31531.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation	0.3142857331.4%
jalview.datamodel.PDBEntry.Type   jalview.datamodel.PDBEntry.Type	0.312531.2%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed	0.3103448231%
jalview.schemabinding.version2.Sequence   jalview.schemabinding.version2.Sequence	0.3103448231%
jalview.schemabinding.version2.Setting   jalview.schemabinding.version2.Setting	0.3040935730.4%
jalview.schemabinding.version2.Pdbentry   jalview.schemabinding.version2.Pdbentry	0.303030330.3%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency	0.2917933229.2%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges	0.2904290629%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient	0.2903225729%
jalview.ws.dbsources.RfamSeed   jalview.ws.dbsources.RfamSeed	0.285714328.6%
jalview.datamodel.DBRefSource   jalview.datamodel.DBRefSource	0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme	0.285714328.6%
jalview.schemabinding.version2.FeatureSettings   jalview.schemabinding.version2.FeatureSettings	0.282608728.3%
mc_view.Atom   mc_view.Atom	0.282051328.2%
jalview.schemabinding.version2.JSeq   jalview.schemabinding.version2.JSeq	0.2775330527.8%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel	0.2768670327.7%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher	0.2748091527.5%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature	0.2613636326.1%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery	0.2604166626%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils	0.258503425.9%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText	0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment	0.2435897424.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry	0.2411347524.1%
jalview.schemabinding.version2.SequenceSet   jalview.schemabinding.version2.SequenceSet	0.2386363623.9%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor	0.2333333323.3%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher	0.2307692323.1%
jalview.util.Comparison   jalview.util.Comparison	0.2203389922%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client	0.2202380922%
jalview.datamodel.Alignment   jalview.datamodel.Alignment	0.2173479521.7%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings	0.2142857221.4%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter	0.2139037421.4%
jalview.util.QuickSort   jalview.util.QuickSort	0.2135922321.4%
jalview.schemabinding.version2.JalviewModelSequence   jalview.schemabinding.version2.JalviewModelSequence	0.2095238121%
jalview.util.ColorUtils   jalview.util.ColorUtils	0.2067039220.7%
jalview.ws.rest.InputType   jalview.ws.rest.InputType	0.2056074720.6%
jalview.schemabinding.version2.PdbentryItem   jalview.schemabinding.version2.PdbentryItem	0.220%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty	0.1944444519.4%
jalview.io.FileParse   jalview.io.FileParse	0.1895910819%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource	0.1818181918.2%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString	0.1739130517.4%
jalview.schemabinding.version2.VAMSAS   jalview.schemabinding.version2.VAMSAS	0.1739130517.4%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader	0.1652173816.5%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client	0.1616%
jalview.gui.AlignFrame   jalview.gui.AlignFrame	0.1566167515.7%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager	0.1555555615.6%
jalview.viewmodel.seqfeatures.FeatureRendererSettings   jalview.viewmodel.seqfeatures.FeatureRendererSettings	0.1555555615.6%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource	0.1538461615.4%
jalview.schemabinding.version2.Pdbids   jalview.schemabinding.version2.Pdbids	0.1481481514.8%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme	0.1475409914.8%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore	0.1458333314.6%
jalview.util.StringUtils   jalview.util.StringUtils	0.1403508814%
jalview.gui.SplashScreen   jalview.gui.SplashScreen	0.1376146813.8%
jalview.util.DBRefUtils   jalview.util.DBRefUtils	0.1309090913.1%
jalview.schemabinding.version2.VamsasModel   jalview.schemabinding.version2.VamsasModel	0.12512.5%
jalview.schemabinding.version2.Features   jalview.schemabinding.version2.Features	0.12512.5%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector	0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter	0.1237113412.4%
jalview.gui.Console   jalview.gui.Console	0.1234177212.3%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter	0.1226415112.3%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme	0.1176470611.8%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient	0.11538461611.5%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster	0.1136363711.4%
jalview.gui.Desktop   jalview.gui.Desktop	0.1105834511.1%
jalview.gui.ProgressBar   jalview.gui.ProgressBar	0.1084337410.8%
jalview.io.FileFormat   jalview.io.FileFormat	0.10256410410.3%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels	0.10256410410.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile	0.10256410410.3%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker	0.09523819.5%
jalview.util.Platform   jalview.util.Platform	0.090909099.1%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes	0.085106388.5%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager	0.084772378.5%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour	0.082191788.2%
jalview.gui.IdPanel   jalview.gui.IdPanel	0.080402018%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam	0.076923087.7%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel	0.0714285757.1%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix	0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme	0.066666676.7%
jalview.bin.Cache   jalview.bin.Cache	0.065015486.5%
jalview.analysis.CrossRef   jalview.analysis.CrossRef	0.0649895156.5%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle	0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu	0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher	0.0577777775.8%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl	0.0540540555.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer	0.0512820525.1%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane	0.0487804864.9%
jalview.gui.IdCanvas   jalview.gui.IdCanvas	0.047619054.8%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager	0.0448717964.5%
jalview.gui.BlogReader   jalview.gui.BlogReader	0.044321334.4%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb	0.042553194.3%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour	0.041125544.1%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList	0.0373831763.7%
jalview.gui.ScalePanel   jalview.gui.ScalePanel	0.035294123.5%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient	0.0310559013.1%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas	0.0297131153%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot	0.0289855082.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences	0.027397262.7%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder	0.0238095242.4%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme	0.0215053762.2%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults	0.020202022%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns	0.0188679251.9%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq	0.0184842891.8%
jalview.gui.SeqPanel   jalview.gui.SeqPanel	0.0177419351.8%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels	0.016750421.7%
jalview.controller.AlignViewController   jalview.controller.AlignViewController	0.0167364011.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor	0.0156251.6%
jalview.bin.Jalview   jalview.bin.Jalview	0.0154109591.5%
mc_view.PDBfile   mc_view.PDBfile	0.0152671761.5%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer	0.0147783251.5%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher	0.0117416831.2%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer	0.0102145051%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer	0.0100502511%
jalview.jbgui.GDesktop   jalview.jbgui.GDesktop	0.0096153851%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene	0.0081632650.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils	0.0080822920.8%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport	0.0077821010.8%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection	0.0041322310.4%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding	0.00285714280.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties	9.4831677E-40.1%