Clover icon

jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.schemabinding.version2

File Feature.java

 

Coverage histogram

../../../img/srcFileCovDistChart5.png
40% of files have more coverage

Code metrics

6
54
37
1
548
217
43
0.8
1.46
37
1.16

Classes

Class Line # Actions
Feature 22 54 43 48
0.505154650.5%
 

Contributing tests

This file is covered by 9 tests. .

Source view

1    /*
2    * This class was automatically generated with
3    * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4    * Schema.
5    * $Id$
6    */
7   
8    package jalview.schemabinding.version2;
9   
10    //---------------------------------/
11    //- Imported classes and packages -/
12    //---------------------------------/
13   
14    import org.exolab.castor.xml.Marshaller;
15    import org.exolab.castor.xml.Unmarshaller;
16   
17    /**
18    * Class Feature.
19    *
20    * @version $Revision$ $Date$
21    */
 
22    public class Feature implements java.io.Serializable
23    {
24   
25    // --------------------------/
26    // - Class/Member Variables -/
27    // --------------------------/
28   
29    /**
30    * Field _begin.
31    */
32    private int _begin;
33   
34    /**
35    * keeps track of state for field: _begin
36    */
37    private boolean _has_begin;
38   
39    /**
40    * Field _end.
41    */
42    private int _end;
43   
44    /**
45    * keeps track of state for field: _end
46    */
47    private boolean _has_end;
48   
49    /**
50    * Field _type.
51    */
52    private java.lang.String _type;
53   
54    /**
55    * Field _description.
56    */
57    private java.lang.String _description;
58   
59    /**
60    * Field _status.
61    */
62    private java.lang.String _status;
63   
64    /**
65    * Field _featureGroup.
66    */
67    private java.lang.String _featureGroup;
68   
69    /**
70    * Field _score.
71    */
72    private float _score;
73   
74    /**
75    * keeps track of state for field: _score
76    */
77    private boolean _has_score;
78   
79    /**
80    * Field _otherDataList.
81    */
82    private java.util.Vector _otherDataList;
83   
84    // ----------------/
85    // - Constructors -/
86    // ----------------/
87   
 
88  44398 toggle public Feature()
89    {
90  44398 super();
91  44398 this._otherDataList = new java.util.Vector();
92    }
93   
94    // -----------/
95    // - Methods -/
96    // -----------/
97   
98    /**
99    *
100    *
101    * @param vOtherData
102    * @throws java.lang.IndexOutOfBoundsException
103    * if the index given is outside the bounds of the collection
104    */
 
105  28160 toggle public void addOtherData(
106    final jalview.schemabinding.version2.OtherData vOtherData)
107    throws java.lang.IndexOutOfBoundsException
108    {
109  28160 this._otherDataList.addElement(vOtherData);
110    }
111   
112    /**
113    *
114    *
115    * @param index
116    * @param vOtherData
117    * @throws java.lang.IndexOutOfBoundsException
118    * if the index given is outside the bounds of the collection
119    */
 
120  0 toggle public void addOtherData(final int index,
121    final jalview.schemabinding.version2.OtherData vOtherData)
122    throws java.lang.IndexOutOfBoundsException
123    {
124  0 this._otherDataList.add(index, vOtherData);
125    }
126   
127    /**
128    */
 
129  0 toggle public void deleteBegin()
130    {
131  0 this._has_begin = false;
132    }
133   
134    /**
135    */
 
136  0 toggle public void deleteEnd()
137    {
138  0 this._has_end = false;
139    }
140   
141    /**
142    */
 
143  0 toggle public void deleteScore()
144    {
145  0 this._has_score = false;
146    }
147   
148    /**
149    * Method enumerateOtherData.
150    *
151    * @return an Enumeration over all jalview.schemabinding.version2.OtherData
152    * elements
153    */
 
154  0 toggle public java.util.Enumeration enumerateOtherData()
155    {
156  0 return this._otherDataList.elements();
157    }
158   
159    /**
160    * Returns the value of field 'begin'.
161    *
162    * @return the value of field 'Begin'.
163    */
 
164  27650 toggle public int getBegin()
165    {
166  27650 return this._begin;
167    }
168   
169    /**
170    * Returns the value of field 'description'.
171    *
172    * @return the value of field 'Description'.
173    */
 
174  27650 toggle public java.lang.String getDescription()
175    {
176  27650 return this._description;
177    }
178   
179    /**
180    * Returns the value of field 'end'.
181    *
182    * @return the value of field 'End'.
183    */
 
184  27650 toggle public int getEnd()
185    {
186  27650 return this._end;
187    }
188   
189    /**
190    * Returns the value of field 'featureGroup'.
191    *
192    * @return the value of field 'FeatureGroup'.
193    */
 
194  27650 toggle public java.lang.String getFeatureGroup()
195    {
196  27650 return this._featureGroup;
197    }
198   
199    /**
200    * Method getOtherData.
201    *
202    * @param index
203    * @throws java.lang.IndexOutOfBoundsException
204    * if the index given is outside the bounds of the collection
205    * @return the value of the jalview.schemabinding.version2.OtherData at the
206    * given index
207    */
 
208  5080 toggle public jalview.schemabinding.version2.OtherData getOtherData(
209    final int index) throws java.lang.IndexOutOfBoundsException
210    {
211    // check bounds for index
212  5080 if (index < 0 || index >= this._otherDataList.size())
213    {
214  0 throw new IndexOutOfBoundsException("getOtherData: Index value '"
215    + index + "' not in range [0.."
216    + (this._otherDataList.size() - 1) + "]");
217    }
218   
219  5080 return (jalview.schemabinding.version2.OtherData) _otherDataList
220    .get(index);
221    }
222   
223    /**
224    * Method getOtherData.Returns the contents of the collection in an Array.
225    * <p>
226    * Note: Just in case the collection contents are changing in another thread,
227    * we pass a 0-length Array of the correct type into the API call. This way we
228    * <i>know</i> that the Array returned is of exactly the correct length.
229    *
230    * @return this collection as an Array
231    */
 
232  17776 toggle public jalview.schemabinding.version2.OtherData[] getOtherData()
233    {
234  17776 jalview.schemabinding.version2.OtherData[] array = new jalview.schemabinding.version2.OtherData[0];
235  17776 return (jalview.schemabinding.version2.OtherData[]) this._otherDataList
236    .toArray(array);
237    }
238   
239    /**
240    * Method getOtherDataCount.
241    *
242    * @return the size of this collection
243    */
 
244  14954 toggle public int getOtherDataCount()
245    {
246  14954 return this._otherDataList.size();
247    }
248   
249    /**
250    * Returns the value of field 'score'.
251    *
252    * @return the value of field 'Score'.
253    */
 
254  27650 toggle public float getScore()
255    {
256  27650 return this._score;
257    }
258   
259    /**
260    * Returns the value of field 'status'.
261    *
262    * @return the value of field 'Status'.
263    */
 
264  27650 toggle public java.lang.String getStatus()
265    {
266  27650 return this._status;
267    }
268   
269    /**
270    * Returns the value of field 'type'.
271    *
272    * @return the value of field 'Type'.
273    */
 
274  27650 toggle public java.lang.String getType()
275    {
276  27650 return this._type;
277    }
278   
279    /**
280    * Method hasBegin.
281    *
282    * @return true if at least one Begin has been added
283    */
 
284  17776 toggle public boolean hasBegin()
285    {
286  17776 return this._has_begin;
287    }
288   
289    /**
290    * Method hasEnd.
291    *
292    * @return true if at least one End has been added
293    */
 
294  17776 toggle public boolean hasEnd()
295    {
296  17776 return this._has_end;
297    }
298   
299    /**
300    * Method hasScore.
301    *
302    * @return true if at least one Score has been added
303    */
 
304  17776 toggle public boolean hasScore()
305    {
306  17776 return this._has_score;
307    }
308   
309    /**
310    * Method isValid.
311    *
312    * @return true if this object is valid according to the schema
313    */
 
314  0 toggle public boolean isValid()
315    {
316  0 try
317    {
318  0 validate();
319    } catch (org.exolab.castor.xml.ValidationException vex)
320    {
321  0 return false;
322    }
323  0 return true;
324    }
325   
326    /**
327    *
328    *
329    * @param out
330    * @throws org.exolab.castor.xml.MarshalException
331    * if object is null or if any SAXException is thrown during
332    * marshaling
333    * @throws org.exolab.castor.xml.ValidationException
334    * if this object is an invalid instance according to the schema
335    */
 
336  0 toggle public void marshal(final java.io.Writer out)
337    throws org.exolab.castor.xml.MarshalException,
338    org.exolab.castor.xml.ValidationException
339    {
340  0 Marshaller.marshal(this, out);
341    }
342   
343    /**
344    *
345    *
346    * @param handler
347    * @throws java.io.IOException
348    * if an IOException occurs during marshaling
349    * @throws org.exolab.castor.xml.ValidationException
350    * if this object is an invalid instance according to the schema
351    * @throws org.exolab.castor.xml.MarshalException
352    * if object is null or if any SAXException is thrown during
353    * marshaling
354    */
 
355  0 toggle public void marshal(final org.xml.sax.ContentHandler handler)
356    throws java.io.IOException,
357    org.exolab.castor.xml.MarshalException,
358    org.exolab.castor.xml.ValidationException
359    {
360  0 Marshaller.marshal(this, handler);
361    }
362   
363    /**
364    */
 
365  0 toggle public void removeAllOtherData()
366    {
367  0 this._otherDataList.clear();
368    }
369   
370    /**
371    * Method removeOtherData.
372    *
373    * @param vOtherData
374    * @return true if the object was removed from the collection.
375    */
 
376  0 toggle public boolean removeOtherData(
377    final jalview.schemabinding.version2.OtherData vOtherData)
378    {
379  0 boolean removed = _otherDataList.remove(vOtherData);
380  0 return removed;
381    }
382   
383    /**
384    * Method removeOtherDataAt.
385    *
386    * @param index
387    * @return the element removed from the collection
388    */
 
389  0 toggle public jalview.schemabinding.version2.OtherData removeOtherDataAt(
390    final int index)
391    {
392  0 java.lang.Object obj = this._otherDataList.remove(index);
393  0 return (jalview.schemabinding.version2.OtherData) obj;
394    }
395   
396    /**
397    * Sets the value of field 'begin'.
398    *
399    * @param begin
400    * the value of field 'begin'.
401    */
 
402  44398 toggle public void setBegin(final int begin)
403    {
404  44398 this._begin = begin;
405  44398 this._has_begin = true;
406    }
407   
408    /**
409    * Sets the value of field 'description'.
410    *
411    * @param description
412    * the value of field 'description'.
413    */
 
414  44398 toggle public void setDescription(final java.lang.String description)
415    {
416  44398 this._description = description;
417    }
418   
419    /**
420    * Sets the value of field 'end'.
421    *
422    * @param end
423    * the value of field 'end'.
424    */
 
425  44398 toggle public void setEnd(final int end)
426    {
427  44398 this._end = end;
428  44398 this._has_end = true;
429    }
430   
431    /**
432    * Sets the value of field 'featureGroup'.
433    *
434    * @param featureGroup
435    * the value of field 'featureGroup'.
436    */
 
437  44398 toggle public void setFeatureGroup(final java.lang.String featureGroup)
438    {
439  44398 this._featureGroup = featureGroup;
440    }
441   
442    /**
443    *
444    *
445    * @param index
446    * @param vOtherData
447    * @throws java.lang.IndexOutOfBoundsException
448    * if the index given is outside the bounds of the collection
449    */
 
450  0 toggle public void setOtherData(final int index,
451    final jalview.schemabinding.version2.OtherData vOtherData)
452    throws java.lang.IndexOutOfBoundsException
453    {
454    // check bounds for index
455  0 if (index < 0 || index >= this._otherDataList.size())
456    {
457  0 throw new IndexOutOfBoundsException("setOtherData: Index value '"
458    + index + "' not in range [0.."
459    + (this._otherDataList.size() - 1) + "]");
460    }
461   
462  0 this._otherDataList.set(index, vOtherData);
463    }
464   
465    /**
466    *
467    *
468    * @param vOtherDataArray
469    */
 
470  0 toggle public void setOtherData(
471    final jalview.schemabinding.version2.OtherData[] vOtherDataArray)
472    {
473    // -- copy array
474  0 _otherDataList.clear();
475   
476  0 for (int i = 0; i < vOtherDataArray.length; i++)
477    {
478  0 this._otherDataList.add(vOtherDataArray[i]);
479    }
480    }
481   
482    /**
483    * Sets the value of field 'score'.
484    *
485    * @param score
486    * the value of field 'score'.
487    */
 
488  44398 toggle public void setScore(final float score)
489    {
490  44398 this._score = score;
491  44398 this._has_score = true;
492    }
493   
494    /**
495    * Sets the value of field 'status'.
496    *
497    * @param status
498    * the value of field 'status'.
499    */
 
500  0 toggle public void setStatus(final java.lang.String status)
501    {
502  0 this._status = status;
503    }
504   
505    /**
506    * Sets the value of field 'type'.
507    *
508    * @param type
509    * the value of field 'type'.
510    */
 
511  44398 toggle public void setType(final java.lang.String type)
512    {
513  44398 this._type = type;
514    }
515   
516    /**
517    * Method unmarshal.
518    *
519    * @param reader
520    * @throws org.exolab.castor.xml.MarshalException
521    * if object is null or if any SAXException is thrown during
522    * marshaling
523    * @throws org.exolab.castor.xml.ValidationException
524    * if this object is an invalid instance according to the schema
525    * @return the unmarshaled jalview.schemabinding.version2.Featur
526    */
 
527  0 toggle public static jalview.schemabinding.version2.Feature unmarshal(
528    final java.io.Reader reader)
529    throws org.exolab.castor.xml.MarshalException,
530    org.exolab.castor.xml.ValidationException
531    {
532  0 return (jalview.schemabinding.version2.Feature) Unmarshaller.unmarshal(
533    jalview.schemabinding.version2.Feature.class, reader);
534    }
535   
536    /**
537    *
538    *
539    * @throws org.exolab.castor.xml.ValidationException
540    * if this object is an invalid instance according to the schema
541    */
 
542  0 toggle public void validate() throws org.exolab.castor.xml.ValidationException
543    {
544  0 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
545  0 validator.validate(this);
546    }
547   
548    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.