jalviewX
File Residue.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| Residue | 25 | 8 | 4 | 0 |
Contributing tests
This file is covered by 25 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package mc_view; | |
| 22 | ||
| 23 | import java.util.Vector; | |
| 24 | ||
| 25 | public class Residue | |
| 26 | { | |
| 27 | Vector<Atom> atoms; | |
| 28 | ||
| 29 | int number; | |
| 30 | ||
| 31 | int count; | |
| 32 | ||
| 33 | 22377 |  public Residue(Vector<Atom> resAtoms, int number, int count) |
| 34 | { | |
| 35 | 22377 | this.atoms = resAtoms; |
| 36 | 22377 | this.number = number; |
| 37 | 22377 | this.count = count; |
| 38 | } | |
| 39 | ||
| 40 | 44424 | public Atom findAtom(String name) |
| 41 | { | |
| 42 | 44424 | for (Atom atom : atoms) |
| 43 | { | |
| 44 | 44436 | if (atom.name.equals(name)) |
| 45 | { | |
| 46 | 44419 | return atom; |
| 47 | } | |
| 48 | } | |
| 49 | ||
| 50 | 5 | return null; |
| 51 | } | |
| 52 | ||
| 53 | 19051 | public Vector<Atom> getAtoms() |
| 54 | { | |
| 55 | 19051 | return this.atoms; |
| 56 | } | |
| 57 | } |