|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.7435897674.4%
|
|
|
jalview.datamodel.features.RangeComparator
jalview.datamodel.features.RangeComparator
|
0.6470588464.7%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.5748613557.5%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
|
0.4705882447.1%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.467980346.8%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.4640718746.4%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.451612945.2%
|
|
|
jalview.ext.ensembl.EnsemblGenomes
jalview.ext.ensembl.EnsemblGenomes
|
0.4444444544.4%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.4285714342.9%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.3850868338.5%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.3589743735.9%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.3516483635.2%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.345755734.6%
|
|
|
jalview.datamodel.features.FeatureStore.SearchCriterion
jalview.datamodel.features.FeatureStore.SearchCriterion
|
0.3333333433.3%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3095238231%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.303355730.3%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.330%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.291970829.2%
|
|
|
jalview.ws.dbsources.RfamSeed
jalview.ws.dbsources.RfamSeed
|
0.285714328.6%
|
|
|
jalview.datamodel.DBRefSource
jalview.datamodel.DBRefSource
|
0.285714328.6%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.282051328.2%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.279520328%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.2695652227%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.2653721626.5%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.258064525.8%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2525%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.2525%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.2525%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2396694324%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2372881323.7%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.2307692323.1%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.2197802222%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.2127659621.3%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.2121212221.2%
|
|
|
jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.1956521719.6%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.187518.8%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.1843137318.4%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.1818181918.2%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1794871817.9%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.1631205716.3%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.1538461615.4%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.1507936615.1%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.1449814114.5%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.1376146813.8%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.135245913.5%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.1273885412.7%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.1263537912.6%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.1234177212.3%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.1219512212.2%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1206030212.1%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.1204188512%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.1212%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1136363711.4%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.1111111111.1%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.1066666710.7%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.092827019.3%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.085106388.5%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.076923087.7%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.07629877.6%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.074829937.5%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.073170737.3%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0722277.2%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.064516136.5%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.062780276.3%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.0543615675.4%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
|
0.0487804864.9%
|
|
|
jalview.structure.StructureMapping
jalview.structure.StructureMapping
|
0.0466321264.7%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.04566214.6%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.0440251574.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0428713864.3%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.041166384.1%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0306603783.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0289855082.9%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.0264026412.6%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0216718262.2%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0186915881.9%
|
|
|
jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.0159362551.6%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.0150375941.5%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0141643061.4%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.0100502511%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0088195390.9%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00342465750.3%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.00285714280.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
9.4831677E-40.1%
|
|
