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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT

Package jalview.gui

 

Code metrics

7,790
20,399
2,505
140
94
70,490
48,952
7,533
0.37
8.14
17.89
3.01
Package
jalview.gui jalview.gui 94.0 94 3.0071857 3.01 21912.0 21,912 0.28611454
0.2861145428.6%
 
Class
AlignExportOptions AlignExportOptions 12.0 12 1.5 1.5 80.0 80 0.0
0.00%
AnnotationColourChooser AnnotationColourChooser 18.0 18 2.5 2.5 239.0 239 0.0
0.00%
AnnotationExporter AnnotationExporter 15.0 15 1.8666667 1.87 130.0 130 0.0
0.00%
AppVarna.VarnaHighlighter AppVarna.VarnaHighlighter 6.0 6 1.6666666 1.67 31.0 31 0.0
0.00%
AppVarnaBinding AppVarnaBinding 32.0 32 1.71875 1.72 188.0 188 0.0
0.00%
AppVarnaBinding.BackupHolder AppVarnaBinding.BackupHolder 4.0 4 1.75 1.75 23.0 23 0.0
0.00%
AquaInternalFrameManager AquaInternalFrameManager 10.0 10 2.7 2.7 89.0 89 0.0
0.00%
AssociatePdbFileWithSeq AssociatePdbFileWithSeq 1.0 1 6.0 6 30.0 30 0.0
0.00%
CalculationChooser CalculationChooser 21.0 21 2.3809524 2.38 217.0 217 0.0
0.00%
ChannelsRenderer ChannelsRenderer 1.0 1 2.0 2 10.0 10 0.0
0.00%
ChimeraViewFrame ChimeraViewFrame 33.0 33 2.6060605 2.61 344.0 344 0.0
0.00%
ComboBoxTooltipRenderer ComboBoxTooltipRenderer 2.0 2 2.5 2.5 9.0 9 0.0
0.00%
CrossRefAction CrossRefAction 9.0 9 5.888889 5.89 214.0 214 0.0
0.00%
CutAndPasteHtmlTransfer CutAndPasteHtmlTransfer 15.0 15 1.5333333 1.53 73.0 73 0.0
0.00%
CutAndPasteTransfer CutAndPasteTransfer 14.0 14 2.7142856 2.71 142.0 142 0.0
0.00%
EditNameDialog EditNameDialog 4.0 4 1.75 1.75 31.0 31 0.0
0.00%
FeatureEditor FeatureEditor 25.0 25 2.08 2.08 289.0 289 0.0
0.00%
FeatureIcon FeatureIcon 4.0 4 1.75 1.75 36.0 36 0.0
0.00%
FeatureTypeSettings FeatureTypeSettings 51.0 51 2.8823528 2.88 716.0 716 0.0
0.00%
Finder Finder 13.0 13 2.8461537 2.85 147.0 147 0.0
0.00%
FontChooser FontChooser 14.0 14 3.142857 3.14 198.0 198 0.0
0.00%
Help Help 3.0 3 1.6666666 1.67 18.0 18 0.0
0.00%
IdPanel.ScrollThread IdPanel.ScrollThread 4.0 4 2.25 2.25 31.0 31 0.0
0.00%
ImageExporter ImageExporter 6.0 6 2.8333333 2.83 60.0 60 0.0
0.00%
JAL1353bugdemo JAL1353bugdemo 5.0 5 1.6 1.6 40.0 40 0.0
0.00%
JDatabaseTree JDatabaseTree 23.0 23 2.6956522 2.7 264.0 264 0.0
0.00%
JDatabaseTree.DbTreeRenderer JDatabaseTree.DbTreeRenderer 3.0 3 3.0 3 31.0 31 0.0
0.00%
Jalview2XML.SeqFref Jalview2XML.SeqFref 6.0 6 1.3333334 1.33 21.0 21 0.0
0.00%
Jalview2XML_V1 Jalview2XML_V1 7.0 7 7.0 7 255.0 255 0.0
0.00%
JalviewChimeraBindingModel JalviewChimeraBindingModel 12.0 12 1.5 1.5 46.0 46 0.0
0.00%
JalviewColourChooser JalviewColourChooser 4.0 4 1.25 1.25 17.0 17 0.0
0.00%
LineartOptions LineartOptions 8.0 8 1.375 1.38 50.0 50 0.0
0.00%
MenuChooser MenuChooser 2.0 2 2.0 2 28.0 28 0.0
0.00%
MouseEventDemo MouseEventDemo 14.0 14 1.0 1 61.0 61 0.0
0.00%
MouseEventDemo.BlankArea MouseEventDemo.BlankArea 3.0 3 1.0 1 8.0 8 0.0
0.00%
OOMWarning OOMWarning 3.0 3 2.0 2 23.0 23 0.0
0.00%
OptsAndParamsPage OptsAndParamsPage 13.0 13 1.7692307 1.77 80.0 80 0.0
0.00%
OptsAndParamsPage.OptionBox OptsAndParamsPage.OptionBox 11.0 11 3.090909 3.09 100.0 100 0.0
0.00%
OptsAndParamsPage.ParamBox OptsAndParamsPage.ParamBox 22.0 22 3.2272727 3.23 262.0 262 0.0
0.00%
OverviewCanvas OverviewCanvas 6.0 6 3.5 3.5 101.0 101 0.0
0.00%
OverviewPanel OverviewPanel 16.0 16 2.5 2.5 155.0 155 0.0
0.00%
PCAPanel PCAPanel 32.0 32 1.875 1.88 248.0 248 0.0
0.00%
PCAPanel.PCAPrinter PCAPanel.PCAPrinter 2.0 2 3.5 3.5 28.0 28 0.0
0.00%
Preferences.OptionsParam Preferences.OptionsParam 8.0 8 1.125 1.12 21.0 21 0.0
0.00%
Preferences.UrlListSelectionHandler Preferences.UrlListSelectionHandler 1.0 1 4.0 4 20.0 20 0.0
0.00%
PrintThread PrintThread 2.0 2 2.5 2.5 15.0 15 0.0
0.00%
ProgressPanel ProgressPanel 3.0 3 2.3333333 2.33 41.0 41 0.0
0.00%
RedundancyPanel RedundancyPanel 7.0 7 3.4285715 3.43 130.0 130 0.0
0.00%
RestInputParamEditDialog RestInputParamEditDialog 15.0 15 1.9333333 1.93 119.0 119 0.0
0.00%
RestServiceEditorPane RestServiceEditorPane 31.0 31 2.032258 2.03 263.0 263 0.0
0.00%
RotatableCanvas RotatableCanvas 30.0 30 2.9 2.9 352.0 352 0.0
0.00%
SeqPanel.ScrollThread SeqPanel.ScrollThread 5.0 5 2.6 2.6 41.0 41 0.0
0.00%
SplitFrame SplitFrame 40.0 40 2.0 2 305.0 305 0.0
0.00%
StructureChooser.CachedPDB StructureChooser.CachedPDB 3.0 3 1.0 1 7.0 7 0.0
0.00%
TextColourChooser TextColourChooser 13.0 13 1.8461539 1.85 124.0 124 0.0
0.00%
UserDefinedColours UserDefinedColours 20.0 20 4.2 4.2 403.0 403 0.0
0.00%
VamsasApplication VamsasApplication 33.0 33 4.3333335 4.33 560.0 560 0.0
0.00%
WebserviceInfo WebserviceInfo 37.0 37 2.2162163 2.22 290.0 290 0.0
0.00%
WebserviceInfo.AnimatedPanel WebserviceInfo.AnimatedPanel 3.0 3 5.3333335 5.33 56.0 56 0.0
0.00%
WsJobParameters WsJobParameters 57.0 57 2.9122808 2.91 733.0 733 0.0
0.00%
WsPreferences WsPreferences 25.0 25 3.0 3 284.0 284 0.0
0.00%
WsPreferences.JabaWSStatusRenderer WsPreferences.JabaWSStatusRenderer 2.0 2 2.5 2.5 20.0 20 0.0
0.00%
WsPreferences.WsUrlTableModel WsPreferences.WsUrlTableModel 6.0 6 1.1666666 1.17 16.0 16 0.0
0.00%
Preferences Preferences 32.0 32 2.71875 2.72 524.0 524 0.018726591
0.0187265911.9%
SequenceFetcher SequenceFetcher 41.0 41 3.2195122 3.22 492.0 492 0.037181996
0.0371819963.7%
WsParamSetManager WsParamSetManager 5.0 5 7.4 7.4 149.0 149 0.044871796
0.0448717964.5%
ViewSelectionMenu ViewSelectionMenu 11.0 11 2.4545455 2.45 95.0 95 0.05940594
0.059405945.9%
IdPanel IdPanel 19.0 19 3.1578948 3.16 183.0 183 0.08040201
0.080402018%
AppVarna AppVarna 26.0 26 2.8076923 2.81 254.0 254 0.092857145
0.0928571459.3%
SeqPanel SeqPanel 49.0 49 6.897959 6.9 1124.0 1,124 0.09354839
0.093548399.4%
FeatureSettings.ColorEditor FeatureSettings.ColorEditor 5.0 5 1.8 1.8 50.0 50 0.10714286
0.1071428610.7%
FeatureSettings.ColorRenderer FeatureSettings.ColorRenderer 2.0 2 3.0 3 26.0 26 0.13333334
0.1333333413.3%
FeatureSettings.FilterEditor FeatureSettings.FilterEditor 4.0 4 2.0 2 39.0 39 0.13333334
0.1333333413.3%
FeatureSettings.FilterRenderer FeatureSettings.FilterRenderer 2.0 2 2.5 2.5 21.0 21 0.16
0.1616%
AnnotationLabels AnnotationLabels 29.0 29 4.7586207 4.76 498.0 498 0.16582915
0.1658291516.6%
Desktop.MyDesktopManager Desktop.MyDesktopManager 16.0 16 1.1875 1.19 36.0 36 0.2
0.220%
AppJmol.RenderPanel AppJmol.RenderPanel 1.0 1 10.0 10 27.0 27 0.20588236
0.2058823620.6%
BlogReader.LaunchJvBrowserOnItem BlogReader.LaunchJvBrowserOnItem 3.0 3 2.3333333 2.33 19.0 19 0.20833333
0.2083333320.8%
StructureChooser.PDBEntryTableModel StructureChooser.PDBEntryTableModel 8.0 8 1.875 1.88 30.0 30 0.21052632
0.2105263221.1%
AnnotationPanel AnnotationPanel 33.0 33 5.030303 5.03 479.0 479 0.2224026
0.222402622.2%
IdwidthAdjuster IdwidthAdjuster 9.0 9 1.5555556 1.56 34.0 34 0.22727273
0.2272727322.7%
TreePanel TreePanel 39.0 39 1.8461539 1.85 201.0 201 0.25830257
0.2583025725.8%
StructureChooser StructureChooser 40.0 40 3.675 3.67 493.0 493 0.26197603
0.2619760326.2%
AlignFrame AlignFrame 230.0 230 2.8130436 2.81 1797.0 1,797 0.27276406
0.2727640627.3%
TreeCanvas TreeCanvas 28.0 28 4.464286 4.46 363.0 363 0.2826087
0.282608728.3%
AnnotationColumnChooser.StructureFilterPanel AnnotationColumnChooser.StructureFilterPanel 11.0 11 1.5454545 1.55 49.0 49 0.28985506
0.2898550629%
Desktop.MyDesktopPane Desktop.MyDesktopPane 5.0 5 2.6 2.6 29.0 29 0.29268292
0.2926829229.3%
ScalePanel ScalePanel 16.0 16 3.5625 3.56 180.0 180 0.29411766
0.2941176629.4%
Desktop Desktop 134.0 134 2.8656716 2.87 997.0 997 0.32360923
0.3236092332.4%
FeatureSettings.FeatureTableModel FeatureSettings.FeatureTableModel 11.0 11 1.1818181 1.18 19.0 19 0.3448276
0.344827634.5%
UserQuestionnaireCheck UserQuestionnaireCheck 3.0 3 8.333333 8.33 54.0 54 0.3493976
0.349397634.9%
PopupMenu PopupMenu 94.0 94 2.1382978 2.14 570.0 570 0.38841203
0.3884120338.8%
JvOptionPane JvOptionPane 40.0 40 2.125 2.12 133.0 133 0.42173913
0.4217391342.2%
AnnotationRowFilter AnnotationRowFilter 37.0 37 1.7837838 1.78 122.0 122 0.42723006
0.4272300642.7%
JvSwingUtils JvSwingUtils 19.0 19 2.1578948 2.16 80.0 80 0.45578232
0.4557823245.6%
StructureViewer StructureViewer 15.0 15 2.9333334 2.93 86.0 86 0.47239265
0.4723926547.2%
AnnotationColumnChooser.SearchPanel AnnotationColumnChooser.SearchPanel 10.0 10 1.4 1.4 31.0 31 0.48333332
0.4833333248.3%
Console Console 24.0 24 3.5833333 3.58 163.0 163 0.4841772
0.484177248.4%
FeatureSettings FeatureSettings 50.0 50 2.86 2.86 358.0 358 0.48637015
0.4863701548.6%
SeqCanvas SeqCanvas 36.0 36 5.6944447 5.69 491.0 491 0.49692622
0.4969262249.7%
AlignmentPanel AlignmentPanel 65.0 65 2.8307693 2.83 394.0 394 0.5018963
0.501896350.2%
PairwiseAlignPanel PairwiseAlignPanel 3.0 3 5.3333335 5.33 38.0 38 0.525
0.52552.5%
PromptUserConfig PromptUserConfig 5.0 5 4.6 4.6 39.0 39 0.5568182
0.556818255.7%
PaintRefresher PaintRefresher 6.0 6 5.6666665 5.67 58.0 58 0.55725193
0.5572519355.7%
StructureViewerBase StructureViewerBase 58.0 58 2.2413793 2.24 195.0 195 0.56570154
0.5657015456.6%
ColourMenuHelper ColourMenuHelper 9.0 9 3.5555556 3.56 51.0 51 0.5677966
0.567796656.8%
AppJmol AppJmol 24.0 24 2.9166667 2.92 123.0 123 0.5729167
0.572916757.3%
AnnotationColumnChooser AnnotationColumnChooser 23.0 23 2.173913 2.17 113.0 113 0.57835823
0.5783582357.8%
AlignViewport AlignViewport 49.0 49 2.367347 2.37 166.0 166 0.5839599
0.583959958.4%
AnnotationColumnChooser.FurtherActionPanel AnnotationColumnChooser.FurtherActionPanel 6.0 6 1.1666666 1.17 12.0 12 0.5862069
0.586206958.6%
SequenceRenderer SequenceRenderer 9.0 9 7.111111 7.11 82.0 82 0.5960591
0.596059159.6%
JalviewDialog JalviewDialog 7.0 7 1.4285715 1.43 16.0 16 0.6097561
0.609756161%
BlogReader BlogReader 39.0 39 2.5128205 2.51 140.0 140 0.61218834
0.6121883461.2%
ProgressBar ProgressBar 10.0 10 2.1 2.1 30.0 30 0.6385542
0.638554263.9%
AppJmolBinding AppJmolBinding 21.0 21 1.4285715 1.43 24.0 24 0.64705884
0.6470588464.7%
TreePanel.TreeLoader TreePanel.TreeLoader 2.0 2 3.5 3.5 11.0 11 0.65625
0.6562565.6%
Jalview2XML Jalview2XML 90.0 90 8.011111 8.01 1004.0 1,004 0.6920245
0.692024569.2%
IdCanvas IdCanvas 12.0 12 5.5 5.5 71.0 71 0.73992676
0.7399267674%
JalviewChangeSupport JalviewChangeSupport 4.0 4 1.0 1 2.0 2 0.75
0.7575%
SplashScreen SplashScreen 8.0 8 3.0 3 22.0 22 0.79816514
0.7981651479.8%
SliderPanel SliderPanel 24.0 24 2.25 2.25 36.0 36 0.8105263
0.810526381.1%
SplashScreen.SplashImage SplashScreen.SplashImage 3.0 3 1.6666666 1.67 2.0 2 0.88235295
0.8823529588.2%
ItemsRenderer ItemsRenderer 1.0 1 4.0 4 2.0 2 0.8888889
0.888888988.9%
JalviewAppender JalviewAppender 3.0 3 1.3333334 1.33 1.0 1 0.9
0.990%
AnnotationChooser AnnotationChooser 33.0 33 1.7878788 1.79 21.0 21 0.907489
0.90748990.7%
FeatureRenderer FeatureRenderer 1.0 1 4.0 4 0.0 0 1.0
1.0100%
Help.HelpId Help.HelpId 2.0 2 1.0 1 0.0 0 1.0
1.0100%
Jalview2XML.JvAnnotRow Jalview2XML.JvAnnotRow 1.0 1 1.0 1 0.0 0 1.0
1.0100%
This package contains 12 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.