Package	Files	Average Method Complexity	Uncovered Elements	TOTAL Coverage
jalview.datamodel jalview.datamodel	70.0 70	3.0412486 3.04	2363.0 2,363	0.72804695 0.7280469572.8%

Class	Methods	Average Method Complexity	Uncovered Elements	TOTAL Coverage
AlignmentExportData AlignmentExportData	7.0 7	1.0 1	16.0 16	0.0 0.00%
AllColsCollection AllColsCollection	4.0 4	1.0 1	10.0 10	0.0 0.00%
AllRowsCollection AllRowsCollection	5.0 5	1.0 1	13.0 13	0.0 0.00%
BinarySequence BinarySequence	8.0 8	2.75 2.75	68.0 68	0.0 0.00%
BinarySequence.InvalidSequenceTypeException BinarySequence.InvalidSequenceTypeException	1.0 1	1.0 1	2.0 2	0.0 0.00%
CigarCigar CigarCigar	2.0 2	2.5 2.5	16.0 16	0.0 0.00%
FeatureProperties FeatureProperties	2.0 2	2.5 2.5	12.0 12	0.0 0.00%
Provenance Provenance	3.0 3	1.3333334 1.33	10.0 10	0.0 0.00%
ProvenanceEntry ProvenanceEntry	5.0 5	1.0 1	13.0 13	0.0 0.00%
RnaViewerModel RnaViewerModel	1.0 1	1.0 1	8.0 8	0.0 0.00%
SecondaryStructureAnnotation SecondaryStructureAnnotation	3.0 3	1.3333334 1.33	13.0 13	0.0 0.00%
SequencePoint SequencePoint	1.0 1	1.0 1	3.0 3	0.0 0.00%
VisibleColsCollection VisibleColsCollection	4.0 4	1.0 1	10.0 10	0.0 0.00%
VisibleRowsCollection VisibleRowsCollection	5.0 5	1.0 1	12.0 12	0.0 0.00%
AlignmentOrder AlignmentOrder	15.0 15	2.2666667 2.27	91.0 91	0.042105265 0.0421052654.2%
AlignmentView AlignmentView	25.0 25	6.88 6.88	442.0 442	0.34421366 0.3442136634.4%
AlignmentView.ScGroup AlignmentView.ScGroup	4.0 4	1.5 1.5	11.0 11	0.42105263 0.4210526342.1%
SequenceNode SequenceNode	9.0 9	1.7777778 1.78	22.0 22	0.46341464 0.4634146446.3%
CigarArray CigarArray	12.0 12	4.1666665 4.17	101.0 101	0.48469388 0.4846938848.5%
BinaryNode BinaryNode	19.0 19	1.5789474 1.58	35.0 35	0.53333336 0.5333333653.3%
SequenceGroup SequenceGroup	86.0 86	2.1046512 2.1	265.0 265	0.54545456 0.5454545654.5%
AlignedCodonFrame.SequenceToSequenceMapping AlignedCodonFrame.SequenceToSequenceMapping	6.0 6	1.5 1.5	10.0 10	0.5833333 0.583333358.3%
ColumnSelection.IntList ColumnSelection.IntList	18.0 18	1.8333334 1.83	44.0 44	0.58878505 0.5887850558.9%
SequenceCursor SequenceCursor	5.0 5	1.6 1.6	12.0 12	0.6 0.660%
AlignExportSettingsAdapter AlignExportSettingsAdapter	11.0 11	1.0 1	10.0 10	0.61538464 0.6153846461.5%
StructureViewerModel.StructureData StructureViewerModel.StructureData	7.0 7	1.0 1	6.0 6	0.625 0.62562.5%
Alignment Alignment	92.0 92	3.1413043 3.14	355.0 355	0.64606184 0.6460618464.6%
Range Range	6.0 6	1.1666666 1.17	6.0 6	0.6666667 0.666666766.7%
AlignedCodon AlignedCodon	5.0 5	2.2 2.2	10.0 10	0.6969697 0.696969769.7%
AlignmentAnnotation AlignmentAnnotation	47.0 47	6.06383 6.06	224.0 224	0.69932884 0.6993288469.9%
Mapping Mapping	24.0 24	3.2083333 3.21	70.0 70	0.70464134 0.7046413470.5%
SeqCigar SeqCigar	19.0 19	4.7894735 4.79	96.0 96	0.70731705 0.7073170570.7%
Annotation Annotation	6.0 6	3.0 3	20.0 20	0.71428573 0.7142857371.4%
PDBEntry.Type PDBEntry.Type	5.0 5	1.2 1.2	4.0 4	0.75 0.7575%
GraphLine GraphLine	3.0 3	3.3333333 3.33	7.0 7	0.7586207 0.758620775.9%
StructureViewerModel StructureViewerModel	21.0 21	1.0 1	10.0 10	0.8 0.880%
CigarBase CigarBase	13.0 13	7.6153846 7.62	61.0 61	0.820059 0.82005982%
Profiles Profiles	4.0 4	2.0 2	2.0 2	0.8333333 0.833333383.3%
SequenceFeature SequenceFeature	38.0 38	2.4210527 2.42	40.0 40	0.8484849 0.848484984.8%
AlignedCodonFrame AlignedCodonFrame	28.0 28	3.4285715 3.43	44.0 44	0.85333335 0.8533333585.3%
ColumnSelection ColumnSelection	22.0 22	4.0 4	32.0 32	0.8677686 0.867768686.8%
SearchResults SearchResults	11.0 11	2.6363637 2.64	13.0 13	0.86868685 0.8686868586.9%
Profile Profile	9.0 9	1.3333334 1.33	4.0 4	0.87096775 0.8709677587.1%
SearchResults.Match SearchResults.Match	7.0 7	1.7142857 1.71	4.0 4	0.8918919 0.891891989.2%
RangeIterator RangeIterator	6.0 6	2.0 2	3.0 3	0.9189189 0.918918991.9%
Mapping.AlignedCodonIterator Mapping.AlignedCodonIterator	8.0 8	3.0 3	7.0 7	0.92045456 0.9204545692%
AlignmentAnnotation.AnnotCharSequence AlignmentAnnotation.AnnotCharSequence	6.0 6	2.8333333 2.83	2.0 2	0.9259259 0.925925992.6%
DBRefSource DBRefSource	1.0 1	4.0 4	1.0 1	0.9285714 0.928571492.9%
Sequence Sequence	86.0 86	3.7325583 3.73	74.0 74	0.9317343 0.931734393.2%
DBRefEntry DBRefEntry	20.0 20	3.95 3.95	7.0 7	0.95035464 0.9503546495%
RangeElementsIterator RangeElementsIterator	5.0 5	2.0 2	1.0 1	0.96875 0.9687596.9%
HiddenSequences HiddenSequences	15.0 15	3.9333334 3.93	6.0 6	0.9726027 0.972602797.3%
PDBEntry PDBEntry	23.0 23	2.8695652 2.87	4.0 4	0.9745223 0.974522397.5%
HiddenColumns HiddenColumns	33.0 33	2.969697 2.97	1.0 1	0.9976415 0.997641599.8%
AllColsIterator AllColsIterator	4.0 4	1.25 1.25	0.0 0	1.0 1.0100%
AllRowsIterator AllRowsIterator	4.0 4	1.25 1.25	0.0 0	1.0 1.0100%
HiddenColumnsCursor HiddenColumnsCursor	8.0 8	2.75 2.75	0.0 0	1.0 1.0100%
HiddenCursorPosition HiddenCursorPosition	3.0 3	1.0 1	0.0 0	1.0 1.0100%
MappingType MappingType	7.0 7	1.0 1	0.0 0	1.0 1.0100%
ResidueCount ResidueCount	23.0 23	3.3913043 3.39	0.0 0	1.0 1.0100%
ResidueCount.SymbolCounts ResidueCount.SymbolCounts	1.0 1	1.0 1	0.0 0	1.0 1.0100%
SequenceDummy SequenceDummy	4.0 4	1.0 1	0.0 0	1.0 1.0100%
StartRegionIterator StartRegionIterator	4.0 4	2.5 2.5	0.0 0	1.0 1.0100%
VisibleContigsIterator VisibleContigsIterator	4.0 4	2.75 2.75	0.0 0	1.0 1.0100%
VisibleRowsIterator VisibleRowsIterator	4.0 4	2.75 2.75	0.0 0	1.0 1.0100%