jalviewX
File SequenceDummy.java
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Classes
| Class | Line # | Actions | ||||
|---|---|---|---|---|---|---|
| SequenceDummy | 23 | 5 | 4 | 0 |
Contributing tests
This file is covered by 26 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel; | |
| 22 | ||
| 23 | public class SequenceDummy extends Sequence | |
| 24 | { | |
| 25 | 36 |  public SequenceDummy(String sequenceId) |
| 26 | { | |
| 27 | 36 | super(sequenceId, "THISAPLACEHOLDER"); |
| 28 | } | |
| 29 | ||
| 30 | private boolean dummy = true; | |
| 31 | ||
| 32 | /** | |
| 33 | * become a proxy for mseq, merging any existing annotation on this sequence | |
| 34 | * | |
| 35 | * @param mseq | |
| 36 | */ | |
| 37 | 9 | public void become(SequenceI mseq) |
| 38 | { | |
| 39 | 9 | initSeqFrom(mseq, null); |
| 40 | 9 | dummy = false; |
| 41 | } | |
| 42 | ||
| 43 | /** | |
| 44 | * Test if the SequenceDummy has been promoted to a real sequence via | |
| 45 | * SequenceDummy.become | |
| 46 | * | |
| 47 | * @return true if this is a placeholder and contains no actual sequence data | |
| 48 | */ | |
| 49 | 9 | public boolean isDummy() |
| 50 | { | |
| 51 | 9 | return dummy; |
| 52 | } | |
| 53 | ||
| 54 | /** | |
| 55 | * Always suppress /start-end for display name as we don't know it | |
| 56 | */ | |
| 57 | 19 | @Override |
| 58 | public String getDisplayId(boolean jvsuffix) | |
| 59 | { | |
| 60 | // required for correct behaviour of SequenceIdMatcher | |
| 61 | 19 | return super.getDisplayId(false); |
| 62 | } | |
| 63 | } |