Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
FeatureSettingsModelI	31	0	0	0	-1.0 -	Show methods

Class FeatureSettingsModelI

Class FeatureSettingsModelI	Line # 31	Total Statements 0	Complexity 0	Uncovered Elements 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api;
22
23		import java.util.Comparator;
24
25		/**
26		* An interface that describes the settings configurable in the Feature Settings
27		* dialog.
28		*
29		* @author gmcarstairs
30		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
31		public interface FeatureSettingsModelI extends Comparator<String>
32		{
33
34		// note Java 8 will allow default implementations of these methods in the
35		// interface, simplifying instantiating classes
36
37		/**
38		* Answers true if the specified feature type is displayed
39		*
40		* @param type
41		* @return
42		*/
43		boolean isFeatureDisplayed(String type);
44
45		/**
46		* Answers true if the specified feature group is displayed
47		*
48		* @param group
49		* @return
50		*/
51		boolean isGroupDisplayed(String group);
52
53		/**
54		* Returns the colour (or graduated colour) for the feature type, or null if
55		* not known
56		*
57		* @param type
58		* @return
59		*/
60		FeatureColourI getFeatureColour(String type);
61
62		/**
63		* Returns the transparency value, from 0 (fully transparent) to 1 (fully
64		* opaque)
65		*
66		* @return
67		*/
68		float getTransparency();
69
70		/**
71		* Returns -1 if feature1 is displayed before (below) feature 2, +1 if
72		* feature2 is displayed after (on top of) feature1, or 0 if we don't care.
73		*
74		* <br>
75		* Note that this is the opposite ordering to how features are displayed in
76		* the feature settings dialogue. FeatureRendererModel.setFeaturePriority
77		* takes care of converting between the two.
78		*
79		* @param feature1
80		* @param feature2
81		* @return
82		*/
83		@Override
84		int compare(String feature1, String feature2);
85
86		/**
87		* Answers true if features should be initially sorted so that features with a
88		* shorter average length are displayed on top of those with a longer average
89		* length
90		*
91		* @return
92		*/
93		boolean optimiseOrder();
94
95		}