|
jalview.gui.Jalview2XML.JvAnnotRow
jalview.gui.Jalview2XML.JvAnnotRow
|
1.0100%
|
|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9772727597.7%
|
|
|
jalview.schemabinding.version2.descriptors.JalviewModelDescriptor
jalview.schemabinding.version2.descriptors.JalviewModelDescriptor
|
0.895652289.6%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.871921287.2%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.8571428785.7%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.841463484.1%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.806451680.6%
|
|
|
jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor
jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor
|
0.7913043579.1%
|
|
|
jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor
jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor
|
0.789473778.9%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.schemabinding.version2.descriptors.ThresholdLineDescriptor
jalview.schemabinding.version2.descriptors.ThresholdLineDescriptor
|
0.768518576.9%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.7575%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.7435897674.4%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.738095273.8%
|
|
|
jalview.schemabinding.version2.descriptors.AnnotationDescriptor
jalview.schemabinding.version2.descriptors.AnnotationDescriptor
|
0.7369255473.7%
|
|
|
jalview.schemabinding.version2.descriptors.AnnotationColourSchemeDescriptor
jalview.schemabinding.version2.descriptors.AnnotationColourSchemeDescriptor
|
0.732283573.2%
|
|
|
jalview.schemabinding.version2.descriptors.JGroupDescriptor
jalview.schemabinding.version2.descriptors.JGroupDescriptor
|
0.732283573.2%
|
|
|
jalview.schemabinding.version2.descriptors.AnnotationColoursDescriptor
jalview.schemabinding.version2.descriptors.AnnotationColoursDescriptor
|
0.7272727572.7%
|
|
|
jalview.schemabinding.version2.descriptors.VamsasModelDescriptor
jalview.schemabinding.version2.descriptors.VamsasModelDescriptor
|
0.7272727572.7%
|
|
|
jalview.schemabinding.version2.descriptors.ViewportDescriptor
jalview.schemabinding.version2.descriptors.ViewportDescriptor
|
0.717299671.7%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.schemabinding.version2.descriptors.SequenceSetDescriptor
jalview.schemabinding.version2.descriptors.SequenceSetDescriptor
|
0.7125748471.3%
|
|
|
jalview.schemabinding.version2.descriptors.SequenceDescriptor
jalview.schemabinding.version2.descriptors.SequenceDescriptor
|
0.708333370.8%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.701030970.1%
|
|
|
jalview.gui.JalviewAppender
jalview.gui.JalviewAppender
|
0.770%
|
|
|
jalview.schemabinding.version2.AnnotationColourScheme
jalview.schemabinding.version2.AnnotationColourScheme
|
0.6829268368.3%
|
|
|
jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor
jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor
|
0.6604938566%
|
|
|
jalview.schemabinding.version2.JGroup
jalview.schemabinding.version2.JGroup
|
0.630434863%
|
|
|
jalview.schemabinding.version2.descriptors.JSeqDescriptor
jalview.schemabinding.version2.descriptors.JSeqDescriptor
|
0.6302250663%
|
|
|
jalview.schemes.AnnotationColourGradient
jalview.schemes.AnnotationColourGradient
|
0.626865762.7%
|
|
|
jalview.schemabinding.version2.descriptors.VAMSASDescriptor
jalview.schemabinding.version2.descriptors.VAMSASDescriptor
|
0.6153846461.5%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.6071428760.7%
|
|
|
jalview.schemabinding.version2.AnnotationElement
jalview.schemabinding.version2.AnnotationElement
|
0.660%
|
|
|
jalview.schemabinding.version2.Viewport
jalview.schemabinding.version2.Viewport
|
0.5891472758.9%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.574167557.4%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
|
|
jalview.schemabinding.version2.SequenceType
jalview.schemabinding.version2.SequenceType
|
0.562556.2%
|
|
|
jalview.schemabinding.version2.JalviewModel
jalview.schemabinding.version2.JalviewModel
|
0.562556.2%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.533898353.4%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.5290322352.9%
|
|
|
jalview.schemabinding.version2.ThresholdLine
jalview.schemabinding.version2.ThresholdLine
|
0.526315852.6%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemabinding.version2.Annotation
jalview.schemabinding.version2.Annotation
|
0.4940711649.4%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.482758648.3%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.4819944548.2%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.4545454745.5%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.4523809645.2%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.4521739245.2%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.448979644.9%
|
|
|
jalview.ext.ensembl.EnsemblGenomes
jalview.ext.ensembl.EnsemblGenomes
|
0.4444444544.4%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.4407294744.1%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.4024075640.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.FollowerColourScheme
jalview.schemes.FollowerColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.399267439.9%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.3953013439.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3730158837.3%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3718411637.2%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.3640960836.4%
|
|
|
jalview.gui.Jalview2XML
jalview.gui.Jalview2XML
|
0.3604294436%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3486238434.9%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.346278334.6%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.3458646534.6%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3221476432.2%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.3169014231.7%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.3030907230.3%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.297029729.7%
|
|
|
jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2903225729%
|
|
|
jalview.ws.dbsources.RfamSeed
jalview.ws.dbsources.RfamSeed
|
0.285714328.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.datamodel.GraphLine
jalview.datamodel.GraphLine
|
0.2758620727.6%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2739852427.4%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
|
|
|
jalview.io.AnnotationFile
jalview.io.AnnotationFile
|
0.266775826.7%
|
|
|
jalview.schemabinding.version2.JSeq
jalview.schemabinding.version2.JSeq
|
0.259911926%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.25954226%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.258503425.9%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.252788125.3%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2525%
|
|
|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2439024424.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.2402234724%
|
|
|
jalview.schemabinding.version2.SequenceSet
jalview.schemabinding.version2.SequenceSet
|
0.2386363623.9%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.2322834623.2%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.2307692323.1%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.2272727322.7%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.2202380922%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.2196078422%
|
|
|
jalview.schemabinding.version2.JalviewModelSequence
jalview.schemabinding.version2.JalviewModelSequence
|
0.2190476221.9%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.2178387621.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2146892721.5%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.2139037421.4%
|
|
|
jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
|
0.2083333320.8%
|
|
|
jalview.schemabinding.version2.Sequence
jalview.schemabinding.version2.Sequence
|
0.2068965620.7%
|
|
|
jalview.gui.AppJmol.RenderPanel
jalview.gui.AppJmol.RenderPanel
|
0.2058823620.6%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.gui.TreeCanvas
jalview.gui.TreeCanvas
|
0.1956521719.6%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1944444519.4%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.1818181918.2%
|
|
|
jalview.schemabinding.version2.VAMSAS
jalview.schemabinding.version2.VAMSAS
|
0.1739130517.4%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.1670081916.7%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1578308315.8%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1542207715.4%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.1538461615.4%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1403508814%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1373534413.7%
|
|
|
jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.1323529513.2%
|
|
|
jalview.schemabinding.version2.VamsasModel
jalview.schemabinding.version2.VamsasModel
|
0.12512.5%
|
|
|
jalview.schemabinding.version2.AnnotationColours
jalview.schemabinding.version2.AnnotationColours
|
0.12512.5%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1237113412.4%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.1234177212.3%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1219512212.2%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1196581212%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1187511.9%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.1084337410.8%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.1066666710.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1037735910.4%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.10256410410.3%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.10108548410.1%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.090909099.1%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.085106388.5%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.081632658.2%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.080402018%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.077399387.7%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.076923087.7%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.074766357.5%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.067264576.7%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.0649895156.5%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.063926946.4%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.057906465.8%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0545454555.5%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.037735853.8%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0289855082.9%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0215053762.2%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0206611572.1%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.020202022%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0177419351.8%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0167364011.7%
|
|
|
jalview.analysis.TreeModel
jalview.analysis.TreeModel
|
0.0159362551.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0154109591.5%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0117416831.2%
|
|
|
jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.0113636371.1%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0100502511%
|
|
|
jalview.jbgui.GDesktop
jalview.jbgui.GDesktop
|
0.0096153851%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0080822920.8%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0077821010.8%
|
|
