Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
ThresholdLineDescriptor	21	82	25	25	0.768518576.9%	Show methods

Class ThresholdLineDescriptor

Class ThresholdLineDescriptor	Line # 21	Total Statements 82	Complexity 25	Uncovered Elements 25	TOTAL Coverage 0.768518576.9%
getValue(java.lang.Object) : java.lang.Object   getValue(java.lang.Object) : java.lang.Object	7171	2.02	1.01	0.00	1.0 1.0100%
setValue(java.lang.Object,java.lang.Object) : void   setValue(java.lang.Object,java.lang.Object) : void	7878	4.04	2.02	1.01	0.75 0.7575%
newInstance(java.lang.Object) : java.lang.Object   newInstance(java.lang.Object) : java.lang.Object	9191	1.01	1.01	1.01	0.0 0.00%
getValue(java.lang.Object) : java.lang.Object   getValue(java.lang.Object) : java.lang.Object	115115	4.04	2.02	2.02	0.6666667 0.666666766.7%
setValue(java.lang.Object,java.lang.Object) : void   setValue(java.lang.Object,java.lang.Object) : void	126126	7.07	3.03	4.04	0.5555556 0.555555655.6%
newInstance(java.lang.Object) : java.lang.Object   newInstance(java.lang.Object) : java.lang.Object	145145	1.01	1.01	1.01	0.0 0.00%
getValue(java.lang.Object) : java.lang.Object   getValue(java.lang.Object) : java.lang.Object	170170	4.04	2.02	2.02	0.6666667 0.666666766.7%
setValue(java.lang.Object,java.lang.Object) : void   setValue(java.lang.Object,java.lang.Object) : void	181181	7.07	3.03	4.04	0.5555556 0.555555655.6%
newInstance(java.lang.Object) : java.lang.Object   newInstance(java.lang.Object) : java.lang.Object	200200	1.01	1.01	1.01	0.0 0.00%
ThresholdLineDescriptor()   ThresholdLineDescriptor()	5353	43.043	1.01	0.00	1.0 1.0100%
getAccessMode() : org.exolab.castor.mapping.AccessMode   getAccessMode() : org.exolab.castor.mapping.AccessMode	232232	1.01	1.01	1.01	0.0 0.00%
getIdentity() : org.exolab.castor.mapping.FieldDescriptor   getIdentity() : org.exolab.castor.mapping.FieldDescriptor	242242	1.01	1.01	0.00	1.0 1.0100%
getJavaClass() : java.lang.Class   getJavaClass() : java.lang.Class	252252	1.01	1.01	0.00	1.0 1.0100%
getNameSpacePrefix() : java.lang.String   getNameSpacePrefix() : java.lang.String	262262	1.01	1.01	0.00	1.0 1.0100%
getNameSpaceURI() : java.lang.String   getNameSpaceURI() : java.lang.String	272272	1.01	1.01	1.01	0.0 0.00%
getValidator() : org.exolab.castor.xml.TypeValidator   getValidator() : org.exolab.castor.xml.TypeValidator	283283	1.01	1.01	0.00	1.0 1.0100%
getXMLName() : java.lang.String   getXMLName() : java.lang.String	293293	1.01	1.01	0.00	1.0 1.0100%
isElementDefinition() : boolean   isElementDefinition() : boolean	304304	1.01	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.7685185	jalview.io.Jalview2xmlTests.testColourByAnnotScoresjalview.io.Jalview2xmlTests.testColourByAnnotScores	1PASS

 

Source view

1		/*
2		* This class was automatically generated with
3		* <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4		* Schema.
5		* $Id$
6		*/
7
8		package jalview.schemabinding.version2.descriptors;
9
10		//---------------------------------/
11		//- Imported classes and packages -/
12		//---------------------------------/
13
14		import jalview.schemabinding.version2.ThresholdLine;
15
16		/**
17		* Class ThresholdLineDescriptor.
18		*
19		* @version $Revision$ $Date$
20		*/
		76.9% Uncovered Elements: 25 (108) Complexity: 25 Complexity Density: 0.3
21		public class ThresholdLineDescriptor extends
22		org.exolab.castor.xml.util.XMLClassDescriptorImpl
23		{
24
25		// --------------------------/
26		// - Class/Member Variables -/
27		// --------------------------/
28
29		/**
30		* Field _elementDefinition.
31		*/
32		private boolean _elementDefinition;
33
34		/**
35		* Field _nsPrefix.
36		*/
37		private java.lang.String _nsPrefix;
38
39		/**
40		* Field _nsURI.
41		*/
42		private java.lang.String _nsURI;
43
44		/**
45		* Field _xmlName.
46		*/
47		private java.lang.String _xmlName;
48
49		// ----------------/
50		// - Constructors -/
51		// ----------------/
52
		100% Uncovered Elements: 0 (43) Complexity: 1 Complexity Density: 0.02
53	90	public ThresholdLineDescriptor()...
54		{
55	90	super();
56	90	_nsURI = "www.vamsas.ac.uk/jalview/version2";
57	90	_xmlName = "thresholdLine";
58	90	_elementDefinition = true;
59	90	org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
60	90	org.exolab.castor.mapping.FieldHandler handler = null;
61	90	org.exolab.castor.xml.FieldValidator fieldValidator = null;
62		// -- initialize attribute descriptors
63
64		// -- _label
65	90	desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
66		java.lang.String.class, "_label", "label",
67		org.exolab.castor.xml.NodeType.Attribute);
68	90	desc.setImmutable(true);
69	90	handler = new org.exolab.castor.xml.XMLFieldHandler()
70		{
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
71	60	public java.lang.Object getValue(java.lang.Object object)...
72		throws IllegalStateException
73		{
74	60	ThresholdLine target = (ThresholdLine) object;
75	60	return target.getLabel();
76		}
77
		75% Uncovered Elements: 1 (4) Complexity: 2 Complexity Density: 0.5
78	30	public void setValue(java.lang.Object object, java.lang.Object value)...
79		throws IllegalStateException, IllegalArgumentException
80		{
81	30	try
82		{
83	30	ThresholdLine target = (ThresholdLine) object;
84	30	target.setLabel((java.lang.String) value);
85		} catch (java.lang.Exception ex)
86		{
87	0	throw new IllegalStateException(ex.toString());
88		}
89		}
90
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
91	0	public java.lang.Object newInstance(java.lang.Object parent)...
92		{
93	0	return null;
94		}
95		};
96	90	desc.setHandler(handler);
97	90	desc.setMultivalued(false);
98	90	addFieldDescriptor(desc);
99
100		// -- validation code for: _label
101	90	fieldValidator = new org.exolab.castor.xml.FieldValidator();
102		{ // -- local scope
103	90	org.exolab.castor.xml.validators.StringValidator typeValidator;
104	90	typeValidator = new org.exolab.castor.xml.validators.StringValidator();
105	90	fieldValidator.setValidator(typeValidator);
106	90	typeValidator.setWhiteSpace("preserve");
107		}
108	90	desc.setValidator(fieldValidator);
109		// -- _value
110	90	desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
111		java.lang.Float.TYPE, "_value", "value",
112		org.exolab.castor.xml.NodeType.Attribute);
113	90	handler = new org.exolab.castor.xml.XMLFieldHandler()
114		{
		66.7% Uncovered Elements: 2 (6) Complexity: 2 Complexity Density: 0.5
115	60	public java.lang.Object getValue(java.lang.Object object)...
116		throws IllegalStateException
117		{
118	60	ThresholdLine target = (ThresholdLine) object;
119	60	if (!target.hasValue())
120		{
121	0	return null;
122		}
123	60	return new java.lang.Float(target.getValue());
124		}
125
		55.6% Uncovered Elements: 4 (9) Complexity: 3 Complexity Density: 0.43
126	30	public void setValue(java.lang.Object object, java.lang.Object value)...
127		throws IllegalStateException, IllegalArgumentException
128		{
129	30	try
130		{
131	30	ThresholdLine target = (ThresholdLine) object;
132		// if null, use delete method for optional primitives
133	30	if (value == null)
134		{
135	0	target.deleteValue();
136	0	return;
137		}
138	30	target.setValue(((java.lang.Float) value).floatValue());
139		} catch (java.lang.Exception ex)
140		{
141	0	throw new IllegalStateException(ex.toString());
142		}
143		}
144
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
145	0	public java.lang.Object newInstance(java.lang.Object parent)...
146		{
147	0	return null;
148		}
149		};
150	90	desc.setHandler(handler);
151	90	desc.setMultivalued(false);
152	90	addFieldDescriptor(desc);
153
154		// -- validation code for: _value
155	90	fieldValidator = new org.exolab.castor.xml.FieldValidator();
156		{ // -- local scope
157	90	org.exolab.castor.xml.validators.FloatValidator typeValidator;
158	90	typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
159	90	fieldValidator.setValidator(typeValidator);
160	90	typeValidator.setMinInclusive((float) -3.4028235E38);
161	90	typeValidator.setMaxInclusive((float) 3.4028235E38);
162		}
163	90	desc.setValidator(fieldValidator);
164		// -- _colour
165	90	desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
166		java.lang.Integer.TYPE, "_colour", "colour",
167		org.exolab.castor.xml.NodeType.Attribute);
168	90	handler = new org.exolab.castor.xml.XMLFieldHandler()
169		{
		66.7% Uncovered Elements: 2 (6) Complexity: 2 Complexity Density: 0.5
170	60	public java.lang.Object getValue(java.lang.Object object)...
171		throws IllegalStateException
172		{
173	60	ThresholdLine target = (ThresholdLine) object;
174	60	if (!target.hasColour())
175		{
176	0	return null;
177		}
178	60	return new java.lang.Integer(target.getColour());
179		}
180
		55.6% Uncovered Elements: 4 (9) Complexity: 3 Complexity Density: 0.43
181	30	public void setValue(java.lang.Object object, java.lang.Object value)...
182		throws IllegalStateException, IllegalArgumentException
183		{
184	30	try
185		{
186	30	ThresholdLine target = (ThresholdLine) object;
187		// if null, use delete method for optional primitives
188	30	if (value == null)
189		{
190	0	target.deleteColour();
191	0	return;
192		}
193	30	target.setColour(((java.lang.Integer) value).intValue());
194		} catch (java.lang.Exception ex)
195		{
196	0	throw new IllegalStateException(ex.toString());
197		}
198		}
199
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
200	0	public java.lang.Object newInstance(java.lang.Object parent)...
201		{
202	0	return null;
203		}
204		};
205	90	desc.setHandler(handler);
206	90	desc.setMultivalued(false);
207	90	addFieldDescriptor(desc);
208
209		// -- validation code for: _colour
210	90	fieldValidator = new org.exolab.castor.xml.FieldValidator();
211		{ // -- local scope
212	90	org.exolab.castor.xml.validators.IntValidator typeValidator;
213	90	typeValidator = new org.exolab.castor.xml.validators.IntValidator();
214	90	fieldValidator.setValidator(typeValidator);
215	90	typeValidator.setMinInclusive(-2147483648);
216	90	typeValidator.setMaxInclusive(2147483647);
217		}
218	90	desc.setValidator(fieldValidator);
219		// -- initialize element descriptors
220
221		}
222
223		// -----------/
224		// - Methods -/
225		// -----------/
226
227		/**
228		* Method getAccessMode.
229		*
230		* @return the access mode specified for this class.
231		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
232	0	public org.exolab.castor.mapping.AccessMode getAccessMode()...
233		{
234	0	return null;
235		}
236
237		/**
238		* Method getIdentity.
239		*
240		* @return the identity field, null if this class has no identity.
241		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
242	120	public org.exolab.castor.mapping.FieldDescriptor getIdentity()...
243		{
244	120	return super.getIdentity();
245		}
246
247		/**
248		* Method getJavaClass.
249		*
250		* @return the Java class represented by this descriptor.
251		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
252	60	public java.lang.Class getJavaClass()...
253		{
254	60	return jalview.schemabinding.version2.ThresholdLine.class;
255		}
256
257		/**
258		* Method getNameSpacePrefix.
259		*
260		* @return the namespace prefix to use when marshaling as XML.
261		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
262	30	public java.lang.String getNameSpacePrefix()...
263		{
264	30	return _nsPrefix;
265		}
266
267		/**
268		* Method getNameSpaceURI.
269		*
270		* @return the namespace URI used when marshaling and unmarshaling as XML.
271		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
272	0	public java.lang.String getNameSpaceURI()...
273		{
274	0	return _nsURI;
275		}
276
277		/**
278		* Method getValidator.
279		*
280		* @return a specific validator for the class described by this
281		* ClassDescriptor.
282		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
283	30	public org.exolab.castor.xml.TypeValidator getValidator()...
284		{
285	30	return this;
286		}
287
288		/**
289		* Method getXMLName.
290		*
291		* @return the XML Name for the Class being described.
292		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
293	180	public java.lang.String getXMLName()...
294		{
295	180	return _xmlName;
296		}
297
298		/**
299		* Method isElementDefinition.
300		*
301		* @return true if XML schema definition of this Class is that of a global
302		* element or element with anonymous type definition.
303		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
304	0	public boolean isElementDefinition()...
305		{
306	0	return _elementDefinition;
307		}
308
309		}