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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.schemabinding.version2

File AnnotationColourScheme.java

 

Coverage histogram

../../../img/srcFileCovDistChart7.png
28% of files have more coverage

Code metrics

0
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36
1
497
189
37
0.8
1.28
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1.03

Classes

Class Line # Actions
AnnotationColourScheme 22 46 37 26
0.6829268368.3%
 

Contributing tests

This file is covered by 1 test. .

Source view

1    /*
2    * This class was automatically generated with
3    * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
4    * Schema.
5    * $Id$
6    */
7   
8    package jalview.schemabinding.version2;
9   
10    //---------------------------------/
11    //- Imported classes and packages -/
12    //---------------------------------/
13   
14    import org.exolab.castor.xml.Marshaller;
15    import org.exolab.castor.xml.Unmarshaller;
16   
17    /**
18    * Class AnnotationColourScheme.
19    *
20    * @version $Revision$ $Date$
21    */
 
22    public class AnnotationColourScheme implements java.io.Serializable
23    {
24   
25    // --------------------------/
26    // - Class/Member Variables -/
27    // --------------------------/
28   
29    /**
30    * Field _aboveThreshold.
31    */
32    private int _aboveThreshold;
33   
34    /**
35    * keeps track of state for field: _aboveThreshold
36    */
37    private boolean _has_aboveThreshold;
38   
39    /**
40    * Field _annotation.
41    */
42    private java.lang.String _annotation;
43   
44    /**
45    * Field _minColour.
46    */
47    private int _minColour;
48   
49    /**
50    * keeps track of state for field: _minColour
51    */
52    private boolean _has_minColour;
53   
54    /**
55    * Field _maxColour.
56    */
57    private int _maxColour;
58   
59    /**
60    * keeps track of state for field: _maxColour
61    */
62    private boolean _has_maxColour;
63   
64    /**
65    * Field _colourScheme.
66    */
67    private java.lang.String _colourScheme;
68   
69    /**
70    * Field _threshold.
71    */
72    private float _threshold;
73   
74    /**
75    * keeps track of state for field: _threshold
76    */
77    private boolean _has_threshold;
78   
79    /**
80    * Field _perSequence.
81    */
82    private boolean _perSequence;
83   
84    /**
85    * keeps track of state for field: _perSequence
86    */
87    private boolean _has_perSequence;
88   
89    /**
90    * Field _predefinedColours.
91    */
92    private boolean _predefinedColours;
93   
94    /**
95    * keeps track of state for field: _predefinedColours
96    */
97    private boolean _has_predefinedColours;
98   
99    // ----------------/
100    // - Constructors -/
101    // ----------------/
102   
 
103  4 toggle public AnnotationColourScheme()
104    {
105  4 super();
106    }
107   
108    // -----------/
109    // - Methods -/
110    // -----------/
111   
112    /**
113    */
 
114  0 toggle public void deleteAboveThreshold()
115    {
116  0 this._has_aboveThreshold = false;
117    }
118   
119    /**
120    */
 
121  0 toggle public void deleteMaxColour()
122    {
123  0 this._has_maxColour = false;
124    }
125   
126    /**
127    */
 
128  0 toggle public void deleteMinColour()
129    {
130  0 this._has_minColour = false;
131    }
132   
133    /**
134    */
 
135  0 toggle public void deletePerSequence()
136    {
137  0 this._has_perSequence = false;
138    }
139   
140    /**
141    */
 
142  0 toggle public void deletePredefinedColours()
143    {
144  0 this._has_predefinedColours = false;
145    }
146   
147    /**
148    */
 
149  0 toggle public void deleteThreshold()
150    {
151  0 this._has_threshold = false;
152    }
153   
154    /**
155    * Returns the value of field 'aboveThreshold'.
156    *
157    * @return the value of field 'AboveThreshold'.
158    */
 
159  6 toggle public int getAboveThreshold()
160    {
161  6 return this._aboveThreshold;
162    }
163   
164    /**
165    * Returns the value of field 'annotation'.
166    *
167    * @return the value of field 'Annotation'.
168    */
 
169  6 toggle public java.lang.String getAnnotation()
170    {
171  6 return this._annotation;
172    }
173   
174    /**
175    * Returns the value of field 'colourScheme'.
176    *
177    * @return the value of field 'ColourScheme'.
178    */
 
179  6 toggle public java.lang.String getColourScheme()
180    {
181  6 return this._colourScheme;
182    }
183   
184    /**
185    * Returns the value of field 'maxColour'.
186    *
187    * @return the value of field 'MaxColour'.
188    */
 
189  6 toggle public int getMaxColour()
190    {
191  6 return this._maxColour;
192    }
193   
194    /**
195    * Returns the value of field 'minColour'.
196    *
197    * @return the value of field 'MinColour'.
198    */
 
199  6 toggle public int getMinColour()
200    {
201  6 return this._minColour;
202    }
203   
204    /**
205    * Returns the value of field 'perSequence'.
206    *
207    * @return the value of field 'PerSequence'.
208    */
 
209  4 toggle public boolean getPerSequence()
210    {
211  4 return this._perSequence;
212    }
213   
214    /**
215    * Returns the value of field 'predefinedColours'.
216    *
217    * @return the value of field 'PredefinedColours'.
218    */
 
219  4 toggle public boolean getPredefinedColours()
220    {
221  4 return this._predefinedColours;
222    }
223   
224    /**
225    * Returns the value of field 'threshold'.
226    *
227    * @return the value of field 'Threshold'.
228    */
 
229  4 toggle public float getThreshold()
230    {
231  4 return this._threshold;
232    }
233   
234    /**
235    * Method hasAboveThreshold.
236    *
237    * @return true if at least one AboveThreshold has been added
238    */
 
239  4 toggle public boolean hasAboveThreshold()
240    {
241  4 return this._has_aboveThreshold;
242    }
243   
244    /**
245    * Method hasMaxColour.
246    *
247    * @return true if at least one MaxColour has been added
248    */
 
249  4 toggle public boolean hasMaxColour()
250    {
251  4 return this._has_maxColour;
252    }
253   
254    /**
255    * Method hasMinColour.
256    *
257    * @return true if at least one MinColour has been added
258    */
 
259  4 toggle public boolean hasMinColour()
260    {
261  4 return this._has_minColour;
262    }
263   
264    /**
265    * Method hasPerSequence.
266    *
267    * @return true if at least one PerSequence has been added
268    */
 
269  4 toggle public boolean hasPerSequence()
270    {
271  4 return this._has_perSequence;
272    }
273   
274    /**
275    * Method hasPredefinedColours.
276    *
277    * @return true if at least one PredefinedColours has been added
278    */
 
279  4 toggle public boolean hasPredefinedColours()
280    {
281  4 return this._has_predefinedColours;
282    }
283   
284    /**
285    * Method hasThreshold.
286    *
287    * @return true if at least one Threshold has been added
288    */
 
289  4 toggle public boolean hasThreshold()
290    {
291  4 return this._has_threshold;
292    }
293   
294    /**
295    * Returns the value of field 'perSequence'.
296    *
297    * @return the value of field 'PerSequence'.
298    */
 
299  2 toggle public boolean isPerSequence()
300    {
301  2 return this._perSequence;
302    }
303   
304    /**
305    * Returns the value of field 'predefinedColours'.
306    *
307    * @return the value of field 'PredefinedColours'.
308    */
 
309  2 toggle public boolean isPredefinedColours()
310    {
311  2 return this._predefinedColours;
312    }
313   
314    /**
315    * Method isValid.
316    *
317    * @return true if this object is valid according to the schema
318    */
 
319  0 toggle public boolean isValid()
320    {
321  0 try
322    {
323  0 validate();
324    } catch (org.exolab.castor.xml.ValidationException vex)
325    {
326  0 return false;
327    }
328  0 return true;
329    }
330   
331    /**
332    *
333    *
334    * @param out
335    * @throws org.exolab.castor.xml.MarshalException
336    * if object is null or if any SAXException is thrown during
337    * marshaling
338    * @throws org.exolab.castor.xml.ValidationException
339    * if this object is an invalid instance according to the schema
340    */
 
341  0 toggle public void marshal(final java.io.Writer out)
342    throws org.exolab.castor.xml.MarshalException,
343    org.exolab.castor.xml.ValidationException
344    {
345  0 Marshaller.marshal(this, out);
346    }
347   
348    /**
349    *
350    *
351    * @param handler
352    * @throws java.io.IOException
353    * if an IOException occurs during marshaling
354    * @throws org.exolab.castor.xml.ValidationException
355    * if this object is an invalid instance according to the schema
356    * @throws org.exolab.castor.xml.MarshalException
357    * if object is null or if any SAXException is thrown during
358    * marshaling
359    */
 
360  0 toggle public void marshal(final org.xml.sax.ContentHandler handler)
361    throws java.io.IOException,
362    org.exolab.castor.xml.MarshalException,
363    org.exolab.castor.xml.ValidationException
364    {
365  0 Marshaller.marshal(this, handler);
366    }
367   
368    /**
369    * Sets the value of field 'aboveThreshold'.
370    *
371    * @param aboveThreshold
372    * the value of field 'aboveThreshold'.
373    */
 
374  4 toggle public void setAboveThreshold(final int aboveThreshold)
375    {
376  4 this._aboveThreshold = aboveThreshold;
377  4 this._has_aboveThreshold = true;
378    }
379   
380    /**
381    * Sets the value of field 'annotation'.
382    *
383    * @param annotation
384    * the value of field 'annotation'.
385    */
 
386  4 toggle public void setAnnotation(final java.lang.String annotation)
387    {
388  4 this._annotation = annotation;
389    }
390   
391    /**
392    * Sets the value of field 'colourScheme'.
393    *
394    * @param colourScheme
395    * the value of field 'colourScheme'.
396    */
 
397  4 toggle public void setColourScheme(final java.lang.String colourScheme)
398    {
399  4 this._colourScheme = colourScheme;
400    }
401   
402    /**
403    * Sets the value of field 'maxColour'.
404    *
405    * @param maxColour
406    * the value of field 'maxColour'.
407    */
 
408  4 toggle public void setMaxColour(final int maxColour)
409    {
410  4 this._maxColour = maxColour;
411  4 this._has_maxColour = true;
412    }
413   
414    /**
415    * Sets the value of field 'minColour'.
416    *
417    * @param minColour
418    * the value of field 'minColour'.
419    */
 
420  4 toggle public void setMinColour(final int minColour)
421    {
422  4 this._minColour = minColour;
423  4 this._has_minColour = true;
424    }
425   
426    /**
427    * Sets the value of field 'perSequence'.
428    *
429    * @param perSequence
430    * the value of field 'perSequence'.
431    */
 
432  4 toggle public void setPerSequence(final boolean perSequence)
433    {
434  4 this._perSequence = perSequence;
435  4 this._has_perSequence = true;
436    }
437   
438    /**
439    * Sets the value of field 'predefinedColours'.
440    *
441    * @param predefinedColours
442    * the value of field 'predefinedColours'.
443    */
 
444  4 toggle public void setPredefinedColours(final boolean predefinedColours)
445    {
446  4 this._predefinedColours = predefinedColours;
447  4 this._has_predefinedColours = true;
448    }
449   
450    /**
451    * Sets the value of field 'threshold'.
452    *
453    * @param threshold
454    * the value of field 'threshold'.
455    */
 
456  4 toggle public void setThreshold(final float threshold)
457    {
458  4 this._threshold = threshold;
459  4 this._has_threshold = true;
460    }
461   
462    /**
463    * Method unmarshal.
464    *
465    * @param reader
466    * @throws org.exolab.castor.xml.MarshalException
467    * if object is null or if any SAXException is thrown during
468    * marshaling
469    * @throws org.exolab.castor.xml.ValidationException
470    * if this object is an invalid instance according to the schema
471    * @return the unmarshaled
472    * jalview.schemabinding.version2.AnnotationColourScheme
473    */
 
474  0 toggle public static jalview.schemabinding.version2.AnnotationColourScheme unmarshal(
475    final java.io.Reader reader)
476    throws org.exolab.castor.xml.MarshalException,
477    org.exolab.castor.xml.ValidationException
478    {
479  0 return (jalview.schemabinding.version2.AnnotationColourScheme) Unmarshaller
480    .unmarshal(
481    jalview.schemabinding.version2.AnnotationColourScheme.class,
482    reader);
483    }
484   
485    /**
486    *
487    *
488    * @throws org.exolab.castor.xml.ValidationException
489    * if this object is an invalid instance according to the schema
490    */
 
491  0 toggle public void validate() throws org.exolab.castor.xml.ValidationException
492    {
493  0 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
494  0 validator.validate(this);
495    }
496   
497    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.