|
0.42038217
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntologyjalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesByOntology
|
1PASS
|
|
|
0.41401273
|
jalview.analysis.AlignmentUtilsTests.testFindCdsPositionsjalview.analysis.AlignmentUtilsTests.testFindCdsPositions
|
1PASS
|
|
|
0.40764332
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns
|
1PASS
|
|
|
0.40764332
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel
|
1PASS
|
|
|
0.40764332
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblGenomeTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblGenomeTest.testGetGenomicRangesFromFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblGenomeTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblGenomeTest.testGetIdentifyingFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblCdsTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblCdsTest.testGetGenomicRangesFromFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.analysis.AlignmentUtilsTests.testMapCdsToProteinjalview.analysis.AlignmentUtilsTests.testMapCdsToProtein
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblGeneTest.testGetTranscriptFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetTranscriptFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblCdnaTest.testGetIdentifyingFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblCdsTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblCdsTest.testGetIdentifyingFeatures
|
1PASS
|
|
|
0.40127388
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams
|
1PASS
|
|
|
0.40127388
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_reverseStrandjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_reverseStrand
|
1PASS
|
|
|
0.39490446
|
jalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelectjalview.analysis.AlignmentUtilsTests.testTransferFeatures_withSelect
|
1PASS
|
|
|
0.39490446
|
jalview.analysis.AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompletejalview.analysis.AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete
|
1PASS
|
|
|
0.38853502
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue
|
1PASS
|
|
|
0.37579617
|
jalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures
|
1PASS
|
|
|
0.37579617
|
jalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrandjalview.ext.ensembl.EnsemblGeneTest.testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand
|
1PASS
|
|
|
0.37579617
|
jalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_mixedStrandjalview.ext.ensembl.EnsemblCdnaTest.testGetGenomicRangesFromFeatures_mixedStrand
|
1PASS
|
|
|
0.36942676
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice
|
1PASS
|
|
|
0.3566879
|
jalview.commands.EditCommandTest.testCut_withFeatures_exhaustivejalview.commands.EditCommandTest.testCut_withFeatures_exhaustive
|
1PASS
|
|
|
0.34394905
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay
|
1PASS
|
|
|
0.34394905
|
jalview.commands.EditCommandTest.testCut_withFeaturesjalview.commands.EditCommandTest.testCut_withFeatures
|
1PASS
|
|
|
0.34394905
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat
|
1PASS
|
|
|
0.3375796
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad
|
1PASS
|
|
|
0.3312102
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters
|
1PASS
|
|
|
0.32484075
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation
|
1PASS
|
|
|
0.32484075
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol
|
1PASS
|
|
|
0.32484075
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry
|
1PASS
|
|
|
0.32484075
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews
|
1PASS
|
|
|
0.32484075
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters
|
1PASS
|
|
|
0.32484075
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings
|
1PASS
|
|
|
0.32484075
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation
|
1PASS
|
|
|
0.32484075
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader
|
1PASS
|
|
|
0.32484075
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol
|
1PASS
|
|
|
0.3121019
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn
|
1PASS
|
|
|
0.3057325
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_transparencyTwoFeaturesjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_transparencyTwoFeatures
|
1PASS
|
|
|
0.3057325
|
jalview.controller.AlignViewControllerTest.testFindColumnsWithFeaturejalview.controller.AlignViewControllerTest.testFindColumnsWithFeature
|
1PASS
|
|
|
0.3057325
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_transparencySingleFeaturejalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_transparencySingleFeature
|
1PASS
|
|
|
0.3057325
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns
|
1PASS
|
|
|
0.29936305
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedFeatureColourjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedFeatureColour
|
1PASS
|
|
|
0.2866242
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedWithThresholdjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_graduatedWithThreshold
|
1PASS
|
|
|
0.28025478
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_multipleFeaturesAtPositionNoTransparencyjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_multipleFeaturesAtPositionNoTransparency
|
1PASS
|
|
|
0.28025478
|
jalview.datamodel.features.SequenceFeaturesTest.testGetAllFeaturesjalview.datamodel.features.SequenceFeaturesTest.testGetAllFeatures
|
1PASS
|
|
|
0.27388534
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_contactFeaturejalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_contactFeature
|
1PASS
|
|
|
0.27388534
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureGroupNotDisplayedjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureGroupNotDisplayed
|
1PASS
|
|
|
0.26751593
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureAtEndjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureAtEnd
|
1PASS
|
|
|
0.26751593
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_singleFeatureNotAtPositionjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_singleFeatureNotAtPosition
|
1PASS
|
|
|
0.26751593
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureTypeNotDisplayedjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_featureTypeNotDisplayed
|
1PASS
|
|
|
0.26751593
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_singleFeatureAtPositionjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_singleFeatureAtPosition
|
1PASS
|
|
|
0.25477707
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus
|
1PASS
|
|
|
0.2356688
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureCountjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureCount
|
1PASS
|
|
|
0.2356688
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone
|
1PASS
|
|
|
0.22929937
|
jalview.commands.EditCommandTest.testUndo_cutjalview.commands.EditCommandTest.testUndo_cut
|
1PASS
|
|
|
0.22929937
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures
|
1PASS
|
|
|
0.22292994
|
jalview.renderer.seqfeatures.FeatureRendererTest.testIsVisiblejalview.renderer.seqfeatures.FeatureRendererTest.testIsVisible
|
1PASS
|
|
|
0.21656051
|
jalview.datamodel.SequenceTest.testGetSequenceFeaturesjalview.datamodel.SequenceTest.testGetSequenceFeatures
|
1PASS
|
|
|
0.21656051
|
jalview.datamodel.features.SequenceFeaturesTest.testGetTotalFeatureLengthjalview.datamodel.features.SequenceFeaturesTest.testGetTotalFeatureLength
|
1PASS
|
|
|
0.21019109
|
jalview.datamodel.features.SequenceFeaturesTest.testConstructorjalview.datamodel.features.SequenceFeaturesTest.testConstructor
|
1PASS
|
|
|
0.21019109
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad
|
1PASS
|
|
|
0.21019109
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse
|
1PASS
|
|
|
0.21019109
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureGroupsjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureGroups
|
1PASS
|
|
|
0.21019109
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq
|
1PASS
|
|
|
0.21019109
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand
|
1PASS
|
|
|
0.21019109
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_gapPositionjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_gapPosition
|
1PASS
|
|
|
0.21019109
|
jalview.io.vcf.VCFLoaderTest.testLoadVCFContigjalview.io.vcf.VCFLoaderTest.testLoadVCFContig
|
1PASS
|
|
|
0.21019109
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypesjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypes
|
1PASS
|
|
|
0.20382166
|
jalview.datamodel.features.SequenceFeaturesTest.testShiftFeaturesjalview.datamodel.features.SequenceFeaturesTest.testShiftFeatures
|
1PASS
|
|
|
0.19745223
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff
|
1PASS
|
|
|
0.19745223
|
jalview.commands.EditCommandTest.testCutjalview.commands.EditCommandTest.testCut
|
1PASS
|
|
|
0.19745223
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesForGroupjalview.datamodel.features.SequenceFeaturesTest.testGetFeaturesForGroup
|
1PASS
|
|
|
0.19745223
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat
|
1PASS
|
|
|
0.1910828
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations
|
1PASS
|
|
|
0.1910828
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_noFeaturesShownjalview.renderer.seqfeatures.FeatureColourFinderTest.testFindFeatureColour_noFeaturesShown
|
1PASS
|
|
|
0.1910828
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere
|
1PASS
|
|
|
0.1910828
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings
|
1PASS
|
|
|
0.1910828
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures
|
1PASS
|
|
|
0.1910828
|
jalview.ext.jmol.JmolParserTest.testLocalPDBIdjalview.ext.jmol.JmolParserTest.testLocalPDBId
|
1PASS
|
|
|
0.1910828
|
jalview.datamodel.features.SequenceFeaturesTest.testGetMinimumScore_getMaximumScorejalview.datamodel.features.SequenceFeaturesTest.testGetMinimumScore_getMaximumScore
|
1PASS
|
|
|
0.1910828
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypes_byOntologyjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypes_byOntology
|
1PASS
|
|
|
0.1910828
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade
|
1PASS
|
|
|
0.1910828
|
jalview.datamodel.SequenceTest.testAddSequenceFeaturesjalview.datamodel.SequenceTest.testAddSequenceFeatures
|
1PASS
|
|
|
0.1910828
|
mc_view.PDBChainTest.testMakeResidueList_noAnnotationmc_view.PDBChainTest.testMakeResidueList_noAnnotation
|
1PASS
|
|
|
0.1910828
|
jalview.renderer.seqfeatures.FeatureColourFinderTest.testNoFeaturesDisplayedjalview.renderer.seqfeatures.FeatureColourFinderTest.testNoFeaturesDisplayed
|
1PASS
|
|
|
0.1910828
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations
|
1PASS
|
|
|
0.18471338
|
jalview.analysis.AlignmentUtilsTests.testTransferFeatures_withOmitjalview.analysis.AlignmentUtilsTests.testTransferFeatures_withOmit
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.simpleGff3FileClassjalview.io.FeaturesFileTest.simpleGff3FileClass
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.simpleGff3RelaxedIdMatchingjalview.io.FeaturesFileTest.simpleGff3RelaxedIdMatching
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.simpleGff3FileLoaderjalview.io.FeaturesFileTest.simpleGff3FileLoader
|
1PASS
|
|
|
0.18471338
|
jalview.datamodel.SequenceTest.testDeriveSequence_existingDatasetjalview.datamodel.SequenceTest.testDeriveSequence_existingDataset
|
1PASS
|
|
|
0.18471338
|
jalview.commands.EditCommandTest.testCut_withFeatures5primejalview.commands.EditCommandTest.testCut_withFeatures5prime
|
1PASS
|
|
|
0.18471338
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignmentjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment
|
1PASS
|
|
|
0.18471338
|
jalview.datamodel.SequenceTest.testCopyConstructor_noDatasetjalview.datamodel.SequenceTest.testCopyConstructor_noDataset
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3
|
1PASS
|
|
|
0.18471338
|
jalview.io.gff.InterProScanHelperTest.testProcessProteinMatchjalview.io.gff.InterProScanHelperTest.testProcessProteinMatch
|
1PASS
|
|
|
0.18471338
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.readGff3Filejalview.io.FeaturesFileTest.readGff3File
|
1PASS
|
|
|
0.18471338
|
jalview.datamodel.SequenceDummyTest.testBecomejalview.datamodel.SequenceDummyTest.testBecome
|
1PASS
|
|
|
0.18471338
|
jalview.analysis.AlignmentUtilsTests.testTransferFeaturesjalview.analysis.AlignmentUtilsTests.testTransferFeatures
|
1PASS
|
|
|
0.18471338
|
jalview.analysis.SeqsetUtilsTest.testSeqFeatureAdditionjalview.analysis.SeqsetUtilsTest.testSeqFeatureAddition
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff
|
1PASS
|
|
|
0.18471338
|
jalview.datamodel.SequenceTest.testCopyConstructor_withDatasetjalview.datamodel.SequenceTest.testCopyConstructor_withDataset
|
1PASS
|
|
|
0.18471338
|
jalview.datamodel.SequenceTest.testDeleteChars_withDbRefsAndFeaturesjalview.datamodel.SequenceTest.testDeleteChars_withDbRefsAndFeatures
|
1PASS
|
|
|
0.18471338
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly
|
1PASS
|
|
|
0.17834395
|
jalview.datamodel.features.SequenceFeaturesTest.testGetNonPositionalFeaturesjalview.datamodel.features.SequenceFeaturesTest.testGetNonPositionalFeatures
|
1PASS
|
|
|
0.17834395
|
jalview.analysis.AlignmentSorterTest.testSortByFeature_scorejalview.analysis.AlignmentSorterTest.testSortByFeature_score
|
1PASS
|
|
|
0.17834395
|
jalview.datamodel.features.SequenceFeaturesTest.testGetContactFeaturesjalview.datamodel.features.SequenceFeaturesTest.testGetContactFeatures
|
1PASS
|
|
|
0.17834395
|
jalview.datamodel.features.SequenceFeaturesTest.testGetPositionalFeaturesjalview.datamodel.features.SequenceFeaturesTest.testGetPositionalFeatures
|
1PASS
|
|
|
0.17834395
|
jalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypesForGroupsjalview.datamodel.features.SequenceFeaturesTest.testGetFeatureTypesForGroups
|
1PASS
|
|
|
0.1656051
|
jalview.datamodel.features.SequenceFeaturesTest.testFindFeaturesjalview.datamodel.features.SequenceFeaturesTest.testFindFeatures
|
1PASS
|
|
|
0.1656051
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters
|
1PASS
|
|
|
0.1656051
|
jalview.datamodel.features.SequenceFeaturesTest.testDeletejalview.datamodel.features.SequenceFeaturesTest.testDelete
|
1PASS
|
|
|
0.15286624
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment
|
1PASS
|
|
|
0.15286624
|
jalview.datamodel.AlignedCodonFrameTest.testRealiseWithjalview.datamodel.AlignedCodonFrameTest.testRealiseWith
|
1PASS
|
|
|
0.15286624
|
jalview.commands.TrimRegionCommandTest.testTrimLeft_withUndoAndRedojalview.commands.TrimRegionCommandTest.testTrimLeft_withUndoAndRedo
|
1PASS
|
|
|
0.15286624
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature
|
1PASS
|
|
|
0.15286624
|
jalview.commands.TrimRegionCommandTest.testTrimRight_withUndoAndRedojalview.commands.TrimRegionCommandTest.testTrimRight_withUndoAndRedo
|
1PASS
|
|
|
0.14012739
|
jalview.datamodel.features.SequenceFeaturesTest.testHasFeaturesjalview.datamodel.features.SequenceFeaturesTest.testHasFeatures
|
1PASS
|
|
|
0.14012739
|
jalview.io.AnnotatedPDBFileInputTest.checkPDBSequenceFeaturesjalview.io.AnnotatedPDBFileInputTest.checkPDBSequenceFeatures
|
1PASS
|
|
|
0.14012739
|
jalview.datamodel.features.SequenceFeaturesTest.testVarargsToTypesjalview.datamodel.features.SequenceFeaturesTest.testVarargsToTypes
|
1PASS
|
|
|
0.14012739
|
jalview.io.JSONFileTest.testSeqParsedjalview.io.JSONFileTest.testSeqParsed
|
1PASS
|
|
|
0.12738854
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReportjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport
|
1PASS
|
|
|
0.12738854
|
jalview.datamodel.SequenceTest.testFindFeaturesjalview.datamodel.SequenceTest.testFindFeatures
|
1PASS
|
|
|
0.12101911
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.12101911
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodons
|
1PASS
|
|
|
0.12101911
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO
|
1PASS
|
|
|
0.12101911
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved
|
1PASS
|
|
|
0.12101911
|
jalview.analysis.DnaTest.testTranslateCdna_simplejalview.analysis.DnaTest.testTranslateCdna_simple
|
1PASS
|
|
|
0.12101911
|
jalview.io.AnnotationFileIOTest.exampleAnnotationFileIOjalview.io.AnnotationFileIOTest.exampleAnnotationFileIO
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testReplacejalview.commands.EditCommandTest.testReplace
|
1PASS
|
|
|
0.12101911
|
jalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumns
|
1PASS
|
|
|
0.12101911
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO
|
1PASS
|
|
|
0.12101911
|
jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView
|
1PASS
|
|
|
0.12101911
|
jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testUndo_multipleInsertGapsjalview.commands.EditCommandTest.testUndo_multipleInsertGaps
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs
|
1PASS
|
|
|
0.12101911
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testAppendEdit_deleteGapjalview.commands.EditCommandTest.testAppendEdit_deleteGap
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.SequenceGroupTest.testAddOrRemovejalview.datamodel.SequenceGroupTest.testAddOrRemove
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.SequenceGroupTest.testAddSequencejalview.datamodel.SequenceGroupTest.testAddSequence
|
1PASS
|
|
|
0.12101911
|
jalview.io.PhylipFileTests.testSequentialIOjalview.io.PhylipFileTests.testSequentialIO
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testUndo_multipleCommandsjalview.commands.EditCommandTest.testUndo_multipleCommands
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.SeqCigarTest.testSomethingjalview.datamodel.SeqCigarTest.testSomething
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testUndo_deleteGapjalview.commands.EditCommandTest.testUndo_deleteGap
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testUndo_insertGapjalview.commands.EditCommandTest.testUndo_insertGap
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsOverlapjalview.datamodel.AlignmentTest.testPropagateInsertionsOverlap
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.SequenceTest.testDeleteChars_withGapsjalview.datamodel.SequenceTest.testDeleteChars_withGaps
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapCharjalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapChar
|
1PASS
|
|
|
0.12101911
|
jalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequence
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.AlignmentTest.testPropagateInsertionsjalview.datamodel.AlignmentTest.testPropagateInsertions
|
1PASS
|
|
|
0.12101911
|
jalview.analysis.DnaTest.testTranslateCdna_hiddenColumnsjalview.analysis.DnaTest.testTranslateCdna_hiddenColumns
|
1PASS
|
|
|
0.12101911
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup
|
1PASS
|
|
|
0.12101911
|
jalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependentjalview.analysis.DnaTest.testTranslateCdna_sequenceOrderIndependent
|
1PASS
|
|
|
0.12101911
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO
|
1PASS
|
|
|
0.12101911
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup
|
1PASS
|
|
|
0.12101911
|
jalview.commands.EditCommandTest.testReplace_withGapsjalview.commands.EditCommandTest.testReplace_withGaps
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds
|
1PASS
|
|
|
0.12101911
|
jalview.io.StockholmFileTest.secondaryStructureForRNASequencejalview.io.StockholmFileTest.secondaryStructureForRNASequence
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.SeqCigarTest.testFindPositionjalview.datamodel.SeqCigarTest.testFindPosition
|
1PASS
|
|
|
0.12101911
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence
|
1PASS
|
|
|
0.12101911
|
jalview.io.PhylipFileTests.testInterleavedIOjalview.io.PhylipFileTests.testInterleavedIO
|
1PASS
|
|
|
0.12101911
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores
|
1PASS
|
|
|
0.12101911
|
jalview.datamodel.CigarArrayTest.testConstructorjalview.datamodel.CigarArrayTest.testConstructor
|
1PASS
|
|
|
0.11464968
|
jalview.datamodel.features.SequenceFeaturesTest.testDeleteAlljalview.datamodel.features.SequenceFeaturesTest.testDeleteAll
|
1PASS
|
|
|
0.089171976
|
jalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTermjalview.datamodel.features.SequenceFeaturesTest.testIsOntologyTerm
|
1PASS
|
|
|
0.08280255
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons
|
1PASS
|
|
|
0.08280255
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs
|
1PASS
|
|
|
0.08280255
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBChainTest.testMakeResidueList_withTempFactormc_view.PDBChainTest.testMakeResidueList_withTempFactor
|
1PASS
|
|
|
0.070063695
|
jalview.ext.jmol.JmolParserTest.testParse_missingResiduesjalview.ext.jmol.JmolParserTest.testParse_missingResidues
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBChainTest.testMakeCaBondList_nucleotidemc_view.PDBChainTest.testMakeCaBondList_nucleotide
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBfileTest.testParsemc_view.PDBfileTest.testParse
|
1PASS
|
|
|
0.070063695
|
jalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappingsjalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappings
|
1PASS
|
|
|
0.070063695
|
jalview.ext.jmol.JmolParserTest.testFileParserjalview.ext.jmol.JmolParserTest.testFileParser
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBChainTest.testMakeExactMappingmc_view.PDBChainTest.testMakeExactMapping
|
1PASS
|
|
|
0.070063695
|
jalview.ext.jmol.JmolParserTest.testParse_alternativeResiduesjalview.ext.jmol.JmolParserTest.testParse_alternativeResidues
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBChainTest.testMakeCaBondListmc_view.PDBChainTest.testMakeCaBondList
|
1PASS
|
|
|
0.070063695
|
jalview.ws.dbsources.EmblSourceTest.testGetSequencejalview.ws.dbsources.EmblSourceTest.testGetSequence
|
1PASS
|
|
|
0.070063695
|
mc_view.PDBfileTest.testParse_withAnnotations_noSSmc_view.PDBfileTest.testParse_withAnnotations_noSS
|
1PASS
|
|
|
0.070063695
|
jalview.ws.dbsources.UniprotTest.testGetUniprotSequencejalview.ws.dbsources.UniprotTest.testGetUniprotSequence
|
1PASS
|
|
|
0.06369427
|
jalview.datamodel.SequenceTest.testCreateDatasetSequencejalview.datamodel.SequenceTest.testCreateDatasetSequence
|
1PASS
|
|
|
0.06369427
|
jalview.gui.PopupMenuTest.testHideInsertionsjalview.gui.PopupMenuTest.testHideInsertions
|
1PASS
|
|
|
0.06369427
|
jalview.analysis.CrossRefTest.testFindXrefSequences_fromDbRefMapjalview.analysis.CrossRefTest.testFindXrefSequences_fromDbRefMap
|
1PASS
|
|
|
0.06369427
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_filterProductsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_filterProducts
|
1PASS
|
|
|
0.06369427
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts
|
1PASS
|
|
|
0.06369427
|
jalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholdsjalview.gui.AlignFrameTest.testChangeColour_background_groupsAndThresholds
|
1PASS
|
|
|
0.06369427
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsisjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsis
|
1PASS
|
|
|
0.06369427
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotidejalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotide
|
1PASS
|
|
|
0.06369427
|
jalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsjalview.analysis.AlignmentUtilsTests.testMakeCdsAlignment_multipleProteins
|
1PASS
|
|
|
0.025477707
|
jalview.datamodel.features.SequenceFeaturesTest.testSortFeaturesjalview.datamodel.features.SequenceFeaturesTest.testSortFeatures
|
1PASS
|
|
|
0.01910828
|
jalview.datamodel.features.FeatureStoreTest.testShiftFeaturesjalview.datamodel.features.FeatureStoreTest.testShiftFeatures
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceGroupTest.testConstructor_listjalview.datamodel.SequenceGroupTest.testConstructor_list
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AnnotationLabelsTest.testGetTooltipjalview.gui.AnnotationLabelsTest.testGetTooltip
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentAnnotationTests.testLiftOverjalview.datamodel.AlignmentAnnotationTests.testLiftOver
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testFindColumn_unwrappedjalview.gui.SeqPanelTest.testFindColumn_unwrapped
|
1PASS
|
|
|
0.012738854
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testFindMappingsForSequencejalview.util.MappingUtilsTest.testFindMappingsForSequence
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentAnnotationTests.testCopyConstructorjalview.datamodel.AlignmentAnnotationTests.testCopyConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testAddResultjalview.datamodel.SearchResultsTest.testAddResult
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetStartGetEndjalview.datamodel.SequenceTest.testGetStartGetEnd
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AAFrequencyTest.testCompleteConsensus_ignoreGaps_noLogojalview.analysis.AAFrequencyTest.testCompleteConsensus_ignoreGaps_noLogo
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testDeriveSequence_noDatasetGappedjalview.datamodel.SequenceTest.testDeriveSequence_noDatasetGapped
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentAnnotationTests.testAdjustForAlignmentjalview.datamodel.AlignmentAnnotationTests.testAdjustForAlignment
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testCopyConstructorjalview.datamodel.AlignmentTest.testCopyConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinjalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.ColumnSelectionTest.testHideColumns_withSelectionjalview.datamodel.ColumnSelectionTest.testHideColumns_withSelection
|
1PASS
|
|
|
0.012738854
|
jalview.io.PfamFormatInputTest.testPfamFormatNoLimitsjalview.io.PfamFormatInputTest.testPfamFormatNoLimits
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ScalePanelTest.testSelectColumns_withHiddenjalview.gui.ScalePanelTest.testSelectColumns_withHidden
|
1PASS
|
|
|
0.012738854
|
jalview.io.PhylipFileTests.testSequentialDataExtractionjalview.io.PhylipFileTests.testSequentialDataExtraction
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourSchemejalview.schemes.ResidueColourSchemeTest.testIsApplicableTo_dynamicColourScheme
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testPageUpDownWrappedjalview.viewmodel.ViewportRangesTest.testPageUpDownWrapped
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_singleInsertjalview.commands.EditCommandTest.testPriorState_singleInsert
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsjalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_annotations
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.ConservationTest.testCountConservationAndGapsjalview.analysis.ConservationTest.testCountConservationAndGaps
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ScalePanelTest.testBuildPopupMenujalview.gui.ScalePanelTest.testBuildPopupMenu
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testMatchContainsjalview.datamodel.SearchResultsTest.testMatchContains
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAddMappedPositionsjalview.analysis.AlignmentUtilsTests.testAddMappedPositions
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testAddEdit_multipleDeleteGapjalview.commands.EditCommandTest.testAddEdit_multipleDeleteGap
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testBuildSearchResults_withIntronjalview.util.MappingUtilsTest.testBuildSearchResults_withIntron
|
1PASS
|
|
|
0.012738854
|
jalview.gui.StructureViewerTest.testGetSequencesForPdbsjalview.gui.StructureViewerTest.testGetSequencesForPdbs
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.MappedFeaturesTest.testFindProteinVariantsjalview.datamodel.MappedFeaturesTest.testFindProteinVariants
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.OverviewDimensionsShowHiddenTest.testConstructorjalview.viewmodel.OverviewDimensionsShowHiddenTest.testConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqjalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testDeleteSequenceByIndexjalview.datamodel.AlignmentTest.testDeleteSequenceByIndex
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testCreateDataset_updateDbrefMappingsjalview.datamodel.AlignmentTest.testCreateDataset_updateDbrefMappings
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonjalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdefjalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_userdef
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToForwardjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToForward
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappojalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_zappo
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.HiddenColumnsTest.testHideColumnsjalview.datamodel.HiddenColumnsTest.testHideColumns
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testSetNamejalview.datamodel.SequenceTest.testSetName
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.DnaTest.testReverseCdnajalview.analysis.DnaTest.testReverseCdna
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testHashcodejalview.datamodel.SearchResultsTest.testHashcode
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonIteratorTest.testAnotherjalview.datamodel.AlignedCodonIteratorTest.testAnother
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testGetWrappedScrollPositionjalview.viewmodel.ViewportRangesTest.testGetWrappedScrollPosition
|
1PASS
|
|
|
0.012738854
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testFindXrefSourcesForSequence_proteinToDnajalview.analysis.CrossRefTest.testFindXrefSourcesForSequence_proteinToDna
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAddSequencePreserveDatasetIntegrityjalview.datamodel.AlignmentTest.testAddSequencePreserveDatasetIntegrity
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignAsSameSequencesjalview.analysis.AlignmentUtilsTests.testAlignAsSameSequences
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetPrimaryDBRefs_peptidejalview.datamodel.SequenceTest.testGetPrimaryDBRefs_peptide
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignProteinAsDnajalview.analysis.AlignmentUtilsTests.testAlignProteinAsDna
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDnajalview.util.MappingUtilsTest.testMapColumnSelection_proteinToDna
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AAFrequencyTest.testCalculate_noProfilejalview.analysis.AAFrequencyTest.testCalculate_noProfile
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariantsjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_dnaVariants
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToProteinjalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToProtein
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumnsjalview.util.MappingUtilsTest.testMapColumnSelection_hiddenColumns
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testSetViewportLocationjalview.viewmodel.ViewportRangesTest.testSetViewportLocation
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_regionjalview.util.MappingUtilsTest.testMapSequenceGroup_region
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.DnaTest.testReverseSequencejalview.analysis.DnaTest.testReverseSequence
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testInsertCharAtjalview.datamodel.SequenceTest.testInsertCharAt
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testDeriveSequence_noDatasetUngappedjalview.datamodel.SequenceTest.testDeriveSequence_noDatasetUngapped
|
1PASS
|
|
|
0.012738854
|
jalview.io.ClustalFileTest.testParse_noNumberingjalview.io.ClustalFileTest.testParse_noNumbering
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignSeqTest.testIndexEncode_nucleotidejalview.analysis.AlignSeqTest.testIndexEncode_nucleotide
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.DBRefEntryTest.testIsPrimaryCandidatejalview.datamodel.DBRefEntryTest.testIsPrimaryCandidate
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapEditCommandjalview.util.MappingUtilsTest.testMapEditCommand
|
1PASS
|
|
|
0.012738854
|
jalview.util.DBRefUtilsTest.testParseToDbRef_PDBjalview.util.DBRefUtilsTest.testParseToDbRef_PDB
|
1PASS
|
|
|
0.012738854
|
jalview.util.UrlLinkTest.testCreateLinksFromSequencejalview.util.UrlLinkTest.testCreateLinksFromSequence
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AnnotationSorterTest.testSort_timingPresortedjalview.analysis.AnnotationSorterTest.testSort_timingPresorted
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAddMappedPositions_withStopCodonjalview.analysis.AlignmentUtilsTests.testAddMappedPositions_withStopCodon
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AAFrequencyTest.testCompleteConsensus_includeGaps_showLogojalview.analysis.AAFrequencyTest.testCompleteConsensus_includeGaps_showLogo
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.MappingTest.testCopyConstructorjalview.datamodel.MappingTest.testCopyConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedRegionjalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeaturejalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeature
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testEquals_orderDiffersjalview.datamodel.SearchResultsTest.testEquals_orderDiffers
|
1PASS
|
|
|
0.012738854
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testSetDatasetSequence_cascadingjalview.datamodel.SequenceTest.testSetDatasetSequence_cascading
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testGetVisibleWidthjalview.datamodel.AlignmentTest.testGetVisibleWidth
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedjalview.analysis.AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.HiddenSequencesTest.testAdjustHeightSequenceAddedjalview.datamodel.HiddenSequencesTest.testAdjustHeightSequenceAdded
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_reverseToForwardjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_reverseToForward
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.FinderTest.testFindAll_sequenceIdsjalview.analysis.FinderTest.testFindAll_sequenceIds
|
1PASS
|
|
|
0.012738854
|
jalview.structure.StructureSelectionManagerTest.testRegisterMappingsjalview.structure.StructureSelectionManagerTest.testRegisterMappings
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.MatchTest.testToStringjalview.datamodel.MatchTest.testToString
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_removeGappedColsjalview.commands.EditCommandTest.testPriorState_removeGappedCols
|
1PASS
|
|
|
0.012738854
|
jalview.io.StockholmFileTest.stockholmFileRnaSSSpaceCharsjalview.io.StockholmFileTest.stockholmFileRnaSSSpaceChars
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.ConservationTest.testCalculate_thresholdjalview.analysis.ConservationTest.testCalculate_threshold
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonIteratorTest.testNext_incompleteCodonjalview.datamodel.AlignedCodonIteratorTest.testNext_incompleteCodon
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testTransferGeneLocijalview.analysis.AlignmentUtilsTests.testTransferGeneLoci
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindPositionMapjalview.datamodel.SequenceTest.testFindPositionMap
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_querygffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_querygff
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testFindAlignedSequencejalview.datamodel.AlignedCodonFrameTest.testFindAlignedSequence
|
1PASS
|
|
|
0.012738854
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testSearchDatasetjalview.analysis.CrossRefTest.testSearchDataset
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testMatchConstructorjalview.datamodel.SearchResultsTest.testMatchConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testDeleteHiddenSequencejalview.datamodel.AlignmentTest.testDeleteHiddenSequence
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbovejalview.gui.SeqPanelTest.testFindMousePosition_wrapped_scaleAbove
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapColumnSelection_nulljalview.util.MappingUtilsTest.testMapColumnSelection_null
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappojalview.renderer.ResidueColourFinderTest.testGetResidueColour_zappo
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testGetWrappedMaxScrolljalview.viewmodel.ViewportRangesTest.testGetWrappedMaxScroll
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testGetSequencesByNamejalview.analysis.AlignmentUtilsTests.testGetSequencesByName
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceGroupTest.testCopyConstructorjalview.datamodel.SequenceGroupTest.testCopyConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testGetEditStatusMessagejalview.gui.SeqPanelTest.testGetEditStatusMessage
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ResidueColourSchemeTest.testGetNamejalview.schemes.ResidueColourSchemeTest.testGetName
|
1PASS
|
|
|
0.012738854
|
jalview.structure.StructureMappingTest.testEqualsjalview.structure.StructureMappingTest.testEquals
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_splicedjalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_spliced
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testFindMappingsForSequenceAndOthersjalview.util.MappingUtilsTest.testFindMappingsForSequenceAndOthers
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefsjalview.datamodel.AlignmentTest.testVerifyAlignmentDatasetRefs
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindPositionsjalview.datamodel.SequenceTest.testFindPositions
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testDeleteCharsjalview.datamodel.SequenceTest.testDeleteChars
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAlignAs_dnaAsDnajalview.datamodel.AlignmentTest.testAlignAs_dnaAsDna
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ResidueShaderTest.testFindColour_gapColourjalview.renderer.ResidueShaderTest.testFindColour_gapColour
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_targetgffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_targetgff
|
1PASS
|
|
|
0.012738854
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonIteratorTest.testNext_withOffsetjalview.datamodel.AlignedCodonIteratorTest.testNext_withOffset
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequencejalview.datamodel.AlignedCodonFrameTest.testCouldReplaceSequence
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testScrollUp_wrappedjalview.viewmodel.ViewportRangesTest.testScrollUp_wrapped
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.FinderTest.testFind_inDescriptionjalview.analysis.FinderTest.testFind_inDescription
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinjalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein
|
1PASS
|
|
|
0.012738854
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight
|
1PASS
|
|
|
0.012738854
|
jalview.io.StockholmFileTest.stockholmFileRnaSSAlphaCharsjalview.io.StockholmFileTest.stockholmFileRnaSSAlphaChars
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindPosition_withCursorjalview.datamodel.SequenceTest.testFindPosition_withCursor
|
1PASS
|
|
|
0.012738854
|
jalview.io.ClustalFileTest.testParse_withNumberingjalview.io.ClustalFileTest.testParse_withNumbering
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_nonejalview.renderer.ResidueColourFinderTest.testGetResidueColour_none
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.TestAlignSeq.testPrintAlignmentjalview.analysis.TestAlignSeq.testPrintAlignment
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindIndexjalview.datamodel.SequenceTest.testFindIndex
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAppendjalview.datamodel.AlignmentTest.testAppend
|
1PASS
|
|
|
0.012738854
|
jalview.io.StockholmFileTest.dbrefOutputjalview.io.StockholmFileTest.dbrefOutput
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.MappingTest.testToStringjalview.datamodel.MappingTest.testToString
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testExpandContextjalview.analysis.AlignmentUtilsTests.testExpandContext
|
1PASS
|
|
|
0.012738854
|
jalview.util.ComparisonTest.testIsNucleotide_sequencesjalview.util.ComparisonTest.testIsNucleotide_sequences
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceFeatureTest.testGetDetailsReportjalview.datamodel.SequenceFeatureTest.testGetDetailsReport
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProteinjalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdefjalview.renderer.ResidueColourFinderTest.testGetResidueColour_userdef
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testFindGroupjalview.datamodel.AlignmentTest.testFindGroup
|
1PASS
|
|
|
0.012738854
|
jalview.io.PfamFormatInputTest.testPfamFormatValidLimitsjalview.io.PfamFormatInputTest.testPfamFormatValidLimits
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ScalePanelTest.testPreventNegativeStartColumnjalview.gui.ScalePanelTest.testPreventNegativeStartColumn
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.OverviewDimensionsHideHiddenTest.testConstructorjalview.viewmodel.OverviewDimensionsHideHiddenTest.testConstructor
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGapMapjalview.datamodel.SequenceTest.testGapMap
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_singleDeletejalview.commands.EditCommandTest.testPriorState_singleDelete
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetSubsequencejalview.datamodel.SequenceTest.testGetSubsequence
|
1PASS
|
|
|
0.012738854
|
jalview.ext.htsjdk.TestHtsContigDb.testGetSequenceProxyjalview.ext.htsjdk.TestHtsContigDb.testGetSequenceProxy
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotationsjalview.gui.SeqPanelTest.testFindMousePosition_wrapped_noAnnotations
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AnnotationSorterTest.testSort_timingSemisortedjalview.analysis.AnnotationSorterTest.testSort_timingSemisorted
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testIsRealisableWithjalview.datamodel.AlignedCodonFrameTest.testIsRealisableWith
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testCheckValidRangejalview.datamodel.SequenceTest.testCheckValidRange
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.ColumnSelectionTest.testHideSelectedColumnsjalview.datamodel.ColumnSelectionTest.testHideSelectedColumns
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testFindColumn_wrappedjalview.gui.SeqPanelTest.testFindColumn_wrapped
|
1PASS
|
|
|
0.012738854
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testReplacejalview.datamodel.SequenceTest.testReplace
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_targetgffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_targetgff
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testAddMapjalview.datamodel.AlignedCodonFrameTest.testAddMap
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testToStringjalview.datamodel.SearchResultsTest.testToString
|
1PASS
|
|
|
0.012738854
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_virtualFeaturejalview.io.SequenceAnnotationReportTest.testAppendFeature_virtualFeature
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_columnsjalview.util.MappingUtilsTest.testMapSequenceGroup_columns
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnlyjalview.gui.ColourMenuHelperTest.testAddMenuItems_simpleOnly
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.ColumnSelectionTest.testInvertColumnSelectionjalview.datamodel.ColumnSelectionTest.testInvertColumnSelection
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsjalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.HiddenColumnsTest.testGetVisibleStartAndEndIndexjalview.datamodel.HiddenColumnsTest.testGetVisibleStartAndEndIndex
|
1PASS
|
|
|
0.012738854
|
jalview.structure.StructureSelectionManagerTest.testRegisterMappingjalview.structure.StructureSelectionManagerTest.testRegisterMapping
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProteinjalview.util.MappingUtilsTest.testMapColumnSelection_dnaToProtein
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFramejalview.gui.ColourMenuHelperTest.testAddMenuItems_forAlignFrame
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testLocateVisibleStartofSequencejalview.datamodel.SequenceTest.testLocateVisibleStartofSequence
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonIteratorTest.testNext_unmappedPeptidejalview.datamodel.AlignedCodonIteratorTest.testNext_unmappedPeptide
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGapBitsetjalview.datamodel.SequenceTest.testGapBitset
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonIteratorTest.testNextjalview.datamodel.AlignedCodonIteratorTest.testNext
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_nonejalview.renderer.OverviewResColourFinderTest.testGetResidueBoxColour_none
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testInsertGapsAndGapmapsjalview.datamodel.SequenceTest.testInsertGapsAndGapmaps
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AnnotationSorterTest.testSort_timingUnsortedjalview.analysis.AnnotationSorterTest.testSort_timingUnsorted
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetSequencejalview.datamodel.SequenceTest.testGetSequence
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_querygffjalview.io.gff.ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_querygff
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTojalview.schemes.ResidueColourSchemeTest.testIsApplicableTo
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodonsjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons
|
1PASS
|
|
|
0.012738854
|
jalview.util.MapListTest.testCoalesceRanges_withOverlapjalview.util.MapListTest.testCoalesceRanges_withOverlap
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdnajalview.datamodel.AlignmentTest.testAlignAs_proteinAsCdna
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testEqualsjalview.datamodel.SearchResultsTest.testEquals
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToNucleotidejalview.analysis.CrossRefTest.testFindXrefSequences_indirectDbrefToNucleotide
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testDeleteSequenceBySeqjalview.datamodel.AlignmentTest.testDeleteSequenceBySeq
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AAFrequencyTest.testCalculate_withProfilejalview.analysis.AAFrequencyTest.testCalculate_withProfile
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.HiddenSequencesTest.testIsHiddenjalview.datamodel.HiddenSequencesTest.testIsHidden
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testAddEdit_multipleInsertGapjalview.commands.EditCommandTest.testAddEdit_multipleInsertGap
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindIndex_withCursorjalview.datamodel.SequenceTest.testFindIndex_withCursor
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignSeqTest.testIndexEncode_peptidejalview.analysis.AlignSeqTest.testIndexEncode_peptide
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testSetDataset_selfReferencejalview.datamodel.AlignmentTest.testSetDataset_selfReference
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ColourSchemePropertyTest.testGetColourSchemejalview.schemes.ColourSchemePropertyTest.testGetColourScheme
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testIsMappablejalview.analysis.AlignmentUtilsTests.testIsMappable
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testInvolvesSequencejalview.datamodel.SearchResultsTest.testInvolvesSequence
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion_eitherWayjalview.datamodel.AlignedCodonFrameTest.testGetMappedRegion_eitherWay
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptidejalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide
|
1PASS
|
|
|
0.012738854
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_peptidejalview.gui.ColourMenuHelperTest.testAddMenuItems_peptide
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testMarkColumnsjalview.datamodel.SearchResultsTest.testMarkColumns
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ResidueShaderTest.testApplyConservationjalview.renderer.ResidueShaderTest.testApplyConservation
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetPrimaryDBRefs_nucleotidejalview.datamodel.SequenceTest.testGetPrimaryDBRefs_nucleotide
|
1PASS
|
|
|
0.012738854
|
jalview.gui.SeqPanelTest.testGetEditStatusMessage_lockedEditingjalview.gui.SeqPanelTest.testGetEditStatusMessage_lockedEditing
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testMapSequenceGroup_sequencesjalview.util.MappingUtilsTest.testMapSequenceGroup_sequences
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testPadGapsjalview.datamodel.AlignmentTest.testPadGaps
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.MatchTest.testEqualsjalview.datamodel.MatchTest.testEquals
|
1PASS
|
|
|
0.012738854
|
jalview.viewmodel.ViewportRangesTest.testScrollToWrappedVisiblejalview.viewmodel.ViewportRangesTest.testScrollToWrappedVisible
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testIsProteinjalview.datamodel.SequenceTest.testIsProtein
|
1PASS
|
|
|
0.012738854
|
jalview.util.DBRefUtilsTest.testParseToDbRefjalview.util.DBRefUtilsTest.testParseToDbRef
|
1PASS
|
|
|
0.012738854
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO
|
1PASS
|
|
|
0.012738854
|
mc_view.PDBfileTest.testIsRnamc_view.PDBfileTest.testIsRna
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceGroupTest.testContainsjalview.datamodel.SequenceGroupTest.testContains
|
1PASS
|
|
|
0.012738854
|
jalview.util.MappingUtilsTest.testBuildSearchResultsjalview.util.MappingUtilsTest.testBuildSearchResults
|
1PASS
|
|
|
0.012738854
|
jalview.schemes.ColourSchemePropertyTest.testGetColourNamejalview.schemes.ColourSchemePropertyTest.testGetColourName
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentjalview.datamodel.AlignmentTest.testCreateDatasetAlignment
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SearchResultsTest.testEquals_distinctSequencesjalview.datamodel.SearchResultsTest.testEquals_distinctSequences
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AnnotationLabelsTest.testGetStatusMessagejalview.gui.AnnotationLabelsTest.testGetStatusMessage
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_multipleInsertsjalview.commands.EditCommandTest.testPriorState_multipleInserts
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_singleInsertWithOffsetjalview.commands.EditCommandTest.testPriorState_singleInsertWithOffset
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindPositionjalview.datamodel.SequenceTest.testFindPosition
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_removeAllGapsjalview.commands.EditCommandTest.testPriorState_removeAllGaps
|
1PASS
|
|
|
0.012738854
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction
|
1PASS
|
|
|
0.012738854
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.HiddenColumnsTest.testHideInsertionsForjalview.datamodel.HiddenColumnsTest.testHideInsertionsFor
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotationsjalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotations
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testExpandContext_annotationjalview.analysis.AlignmentUtilsTests.testExpandContext_annotation
|
1PASS
|
|
|
0.012738854
|
jalview.io.PhylipFileTests.testInterleavedDataExtractionjalview.io.PhylipFileTests.testInterleavedDataExtraction
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testFindXrefSequences_noDbrefsjalview.analysis.CrossRefTest.testFindXrefSequences_noDbrefs
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testAddEdit_groupInsertGapsjalview.commands.EditCommandTest.testAddEdit_groupInsertGaps
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_forSubSequencesjalview.datamodel.AlignedCodonFrameTest.testGetMappedCodons_forSubSequences
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.ConservationTest.testCalculate_noThresholdjalview.analysis.ConservationTest.testCalculate_noThreshold
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAssertDatasetIsNormalisedjalview.datamodel.AlignmentTest.testAssertDatasetIsNormalised
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.ConservationTest.testVerdictjalview.analysis.ConservationTest.testVerdict
|
1PASS
|
|
|
0.012738854
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly
|
1PASS
|
|
|
0.012738854
|
jalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToReversejalview.io.gff.Gff3HelperTest.testProcessCdnaMatch_forwardToReverse
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testHasCrossRefjalview.analysis.AlignmentUtilsTests.testHasCrossRef
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testGetCharAtjalview.datamodel.SequenceTest.testGetCharAt
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.CrossRefTest.testSameSequencejalview.analysis.CrossRefTest.testSameSequence
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testGetWidthjalview.datamodel.AlignmentTest.testGetWidth
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequencejalview.datamodel.AlignmentTest.testAlignAs_cdnaAsProtein_singleSequence
|
1PASS
|
|
|
0.012738854
|
jalview.commands.EditCommandTest.testPriorState_removeGapsMultipleSeqsjalview.commands.EditCommandTest.testPriorState_removeGapsMultipleSeqs
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testFindOrCreateForNullCalcIdjalview.datamodel.AlignmentTest.testFindOrCreateForNullCalcId
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqsjalview.datamodel.AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqs
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testHaveCrossRefjalview.analysis.AlignmentUtilsTests.testHaveCrossRef
|
1PASS
|
|
|
0.012738854
|
jalview.io.FormatAdapterTest.testRoundTripjalview.io.FormatAdapterTest.testRoundTrip
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testAddDBRefjalview.datamodel.SequenceTest.testAddDBRef
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testMapCdnaToProtein_forSubsequencejalview.analysis.AlignmentUtilsTests.testMapCdnaToProtein_forSubsequence
|
1PASS
|
|
|
0.012738854
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns
|
1PASS
|
|
|
0.012738854
|
jalview.structures.models.AAStructureBindingModelTest.testBuildColoursMapjalview.structures.models.AAStructureBindingModelTest.testBuildColoursMap
|
1PASS
|
|
|
0.012738854
|
jalview.datamodel.SequenceTest.testFindPosition_withCursorAndEditsjalview.datamodel.SequenceTest.testFindPosition_withCursorAndEdits
|
1PASS
|
|
|
0.012738854
|
jalview.io.NewickFileTests.testTreeIOjalview.io.NewickFileTests.testTreeIO
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsjalview.analysis.AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs
|
1PASS
|
|
|
0.012738854
|
jalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyjalview.analysis.AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly
|
1PASS
|
|