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jalview.xml.binding.jalview.SequenceType
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jalview.project.Jalview2XML.JvAnnotRow
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jalview.datamodel.ResidueCount.SymbolCounts
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jalview.renderer.ScaleRenderer
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jalview.xml.binding.jalview.SequenceSet
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jalview.analysis.Conservation
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jalview.util.QuickSort.IntComparator
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jalview.xml.binding.jalview.Annotation
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jalview.xml.binding.jalview.JalviewModel.Viewport
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jalview.io.TCoffeeScoreFile.Header
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jalview.datamodel.Profile
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jalview.schemes.TCoffeeColourScheme
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jalview.xml.binding.jalview.JalviewModel.JSeq
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0.7575%
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jalview.io.TCoffeeScoreFile
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jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.gui.IdCanvas
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jalview.analysis.SequenceIdMatcher
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jalview.io.AlignFile
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jalview.io.TCoffeeScoreFile.Block
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jalview.datamodel.HiddenCursorPosition
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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jalview.schemes.HelixColourScheme
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jalview.schemes.TurnColourScheme
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jalview.schemes.StrandColourScheme
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jalview.schemes.BuriedColourScheme
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jalview.renderer.AnnotationRenderer
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jalview.viewmodel.AlignmentViewport
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jalview.analysis.AAFrequency
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0.3808139638.1%
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jalview.datamodel.ResidueCount
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0.3718411637.2%
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jalview.io.BackupFilenameParts
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jalview.util.MessageManager
jalview.util.MessageManager
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jalview.io.FastaFile
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0.3486238434.9%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.3333333433.3%
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jalview.viewmodel.ViewportRanges
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0.33003333%
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jalview.project.Jalview2XML
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0.3219751732.2%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.282738128.3%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2727272827.3%
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jalview.io.BackupFiles
jalview.io.BackupFiles
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0.2660818726.6%
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jalview.gui.JvSwingUtils
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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jalview.datamodel.AlignmentAnnotation
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.2299465223%
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jalview.util.Comparison
jalview.util.Comparison
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jalview.gui.IdwidthAdjuster
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0.2142857221.4%
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jalview.gui.ScalePanel
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jalview.ws.rest.InputType
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jalview.schemes.ColourSchemes
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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jalview.schemes.IdColourScheme
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jalview.gui.SeqCanvas
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jalview.gui.AnnotationPanel
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jalview.gui.AlignFrame
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0.1648221316.5%
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.1538461615.4%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1333333413.3%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.gui.Console
jalview.gui.Console
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0.12380952412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.gui.Desktop.MyDesktopPane
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0.1219512212.2%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1196581212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws.rest.RestClient
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.1104432811%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.1084337410.8%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1037735910.4%
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jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.089385478.9%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.076923087.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.073094877.3%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0683962266.8%
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jalview.schemes.PIDColourScheme
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jalview.datamodel.HiddenSequences
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jalview.analysis.CrossRef
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.061983476.2%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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ext.vamsas.ServiceHandle
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jalview.util.Platform
jalview.util.Platform
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jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
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jalview.io.AnnotationFile
jalview.io.AnnotationFile
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0.057644115.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0560747655.6%
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jalview.bin.Cache
jalview.bin.Cache
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0.0554272535.5%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045731714.6%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0450450444.5%
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jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.0408858624.1%
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jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0212765952.1%
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jalview.ws.dbsources.Uniprot
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0.0196078442%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.019230771.9%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.0184842891.8%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0157480311.6%
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jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0132127951.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.01302931551.3%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.0123966941.2%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0115702481.2%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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0.00932400950.9%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.009023790.9%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.0076335880.8%
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