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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.structures.models.AAStructureBindingModel.SuperposeData
jalview.structures.models.AAStructureBindingModel.SuperposeData
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.structure.AtomSpecModel
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jalview.analysis.Conservation
jalview.analysis.Conservation
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jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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jalview.util.LinkedIdentityHashSet
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.structures.models.SequenceStructureBindingModel
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0.7575%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.gui.JalviewAppender
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0.770%
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jalview.workers.ConsensusThread
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jalview.jbgui.GStructureViewer
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0.689655269%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.datamodel.PDBEntry
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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jalview.renderer.ResidueColourFinder
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jalview.io.JalviewFileFilter
jalview.io.JalviewFileFilter
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jalview.ext.jmol.JmolParser
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jalview.jbgui.GAlignFrame
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jalview.workers.ConservationThread
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jalview.analysis.AlignSeq
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jalview.util.CaseInsensitiveString
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jalview.gui.ProgressBar
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jalview.structures.models.AAStructureBindingModel
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jalview.datamodel.SearchResults
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mc_view.PDBChain
mc_view.PDBChain
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jalview.gui.AppJmol
jalview.gui.AppJmol
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jalview.io.FileLoader
jalview.io.FileLoader
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jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.schemes.TaylorColourScheme
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jalview.schemes.FeatureSettingsAdapter
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jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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jalview.structure.StructureImportSettings
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jalview.io.BioJsHTMLOutput
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jalview.gui.ColourMenuHelper
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jalview.workers.AlignCalcManager
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jalview.ext.jmol.JalviewJmolBinding
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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jalview.datamodel.HiddenCursorPosition
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.ws.utils.UrlDownloadClient
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.io.StructureFile
jalview.io.StructureFile
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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jalview.schemes.ResidueColourScheme
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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0.440%
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0.440%
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0.440%
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0.440%
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jalview.gui.AppJmolBinding
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0.3965517339.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3922580839.2%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3810264538.1%
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jalview.gui.StructureViewerBase
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jalview.util.Format
jalview.util.Format
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.datamodel.ResidueCount
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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jalview.io.AlignFile
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jalview.viewmodel.ViewportRanges
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jalview.datamodel.features.SequenceFeatures
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.datamodel.SearchResults.Match
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0.3076923230.8%
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jalview.viewmodel.styles.ViewStyle
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jalview.datamodel.AlignmentAnnotation
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.2953367829.5%
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org.json.simple.parser.JSONParser
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2887323828.9%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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jalview.util.Comparison
jalview.util.Comparison
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0.2824858728.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.io.JalviewFileChooser
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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jalview.schemes.IdColourScheme
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jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.datamodel.features.FeatureStore
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.241379324.1%
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jalview.viewmodel.AlignmentViewport
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0.2410640124.1%
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jalview.structure.StructureCommandsBase
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2202380922%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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jalview.analysis.AnnotationSorter
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2053571520.5%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1927236919.3%
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jalview.ws.dbsources.EmblSource
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0.1818181918.2%
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jalview.schemes.TCoffeeColourScheme
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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jalview.gui.StructureViewer
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0.1748633817.5%
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jalview.io.AppletFormatAdapter
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jalview.ws.jws1.WS1Client
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jalview.ws.dbsources.EmblCdsSource
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0.1538461615.4%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.1458333314.6%
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jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
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0.1413043414.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1363636413.6%
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jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.util.Platform
jalview.util.Platform
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jalview.structure.AtomSpec
jalview.structure.AtomSpec
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.gui.Console
jalview.gui.Console
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.gui.Desktop.MyDesktopPane
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0.1219512212.2%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1196581212%
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jalview.gui.IdwidthAdjuster
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0.1190476211.9%
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jalview.datamodel.DBRefEntry
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jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.ws.sifts.SiftsSettings
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jalview.schemes.ColourSchemeProperty
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jalview.schemes.RNAHelicesColour
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.098591559.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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jalview.gui.SeqCanvas
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jalview.gui.Desktop
jalview.gui.Desktop
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jalview.workers.AlignCalcWorker
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jalview.util.JSONUtils
jalview.util.JSONUtils
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.schemes.ColourSchemes
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0.081632658.2%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.ws.dbsources.Xfam
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.061983476.2%
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jalview.bin.Cache
jalview.bin.Cache
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.util.MapList
jalview.util.MapList
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0.0539130425.4%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0415094354.2%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0353773573.5%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0319148943.2%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0299026433%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0288461542.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0210970472.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0196078442%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0157480311.6%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0156494531.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0139458571.4%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.01302931551.3%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0115702481.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.00932400950.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0076335880.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0041322310.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00409416570.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
