|
jalview.xml.binding.jalview.Feature.OtherData
jalview.xml.binding.jalview.Feature.OtherData
|
1.0100%
|
|
|
jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
|
1.0100%
|
|
|
jalview.xml.binding.jalview.FeatureMatcherSet
jalview.xml.binding.jalview.FeatureMatcherSet
|
1.0100%
|
|
|
jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
|
1.0100%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
|
1.0100%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
|
1.0100%
|
|
|
jalview.xml.binding.jalview.FeatureMatcher
jalview.xml.binding.jalview.FeatureMatcher
|
1.0100%
|
|
|
jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.979166797.9%
|
|
|
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
|
0.967741996.8%
|
|
|
jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
|
0.941176594.1%
|
|
|
jalview.io.BackupFilenameFilter
jalview.io.BackupFilenameFilter
|
0.928571492.9%
|
|
|
jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
|
0.916666791.7%
|
|
|
jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
|
0.87587.5%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.8476562584.8%
|
|
|
jalview.util.matcher.Condition
jalview.util.matcher.Condition
|
0.8421052784.2%
|
|
|
jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
|
0.8398437584%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
|
|
|
jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
|
0.798076979.8%
|
|
|
jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
|
0.7884615778.8%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.783251278.3%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
|
0.770833377.1%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.7575%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.gui.JalviewAppender
jalview.gui.JalviewAppender
|
0.770%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.696969769.7%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.6774193667.7%
|
|
|
jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
|
0.6428571364.3%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.5788423457.9%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.5656%
|
|
|
jalview.io.BackupFilesPresetEntry
jalview.io.BackupFilesPresetEntry
|
0.529411852.9%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.5290322352.9%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.550%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.4761904847.6%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4551724245.5%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.4468085244.7%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.427884642.8%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.387236538.7%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.3826086838.3%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.3684210536.8%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.3682460536.8%
|
|
|
jalview.io.BackupFilenameParts
jalview.io.BackupFilenameParts
|
0.3648648636.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3571428735.7%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.354838735.5%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.3432343334.3%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.3410852834.1%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.3333333433.3%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3321299633.2%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.3317535533.2%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3248407532.5%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.3204225332%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.3082437230.8%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.302752330.3%
|
|
|
jalview.datamodel.features.FeatureMatcher
jalview.datamodel.features.FeatureMatcher
|
0.2974683629.7%
|
|
|
jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2903225729%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2674418726.7%
|
|
|
jalview.datamodel.features.FeatureMatcherSet
jalview.datamodel.features.FeatureMatcherSet
|
0.2661870426.6%
|
|
|
jalview.io.BackupFiles
jalview.io.BackupFiles
|
0.2660818726.6%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.2643678226.4%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.2602739626%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.258503425.9%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2567975825.7%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2528735725.3%
|
|
|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2439024424.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.2394366323.9%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.2336633723.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.2323439123.2%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.224489822.4%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.2202380922%
|
|
|
jalview.gui.RotatableCanvas
jalview.gui.RotatableCanvas
|
0.220108722%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.2142857221.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.2084562520.8%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.2068965620.7%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.2063157920.6%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.2033898220.3%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.1962264219.6%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1944444519.4%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.1877022718.8%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.1818181918.2%
|
|
|
jalview.datamodel.SequencePoint
jalview.datamodel.SequencePoint
|
0.1818181918.2%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1818181918.2%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.1564245815.6%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.1555555615.6%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.1555555615.6%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.1538461615.4%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1534883715.3%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.1498023715%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.1461245314.6%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1333333413.3%
|
|
|
jalview.util.matcher.Matcher
jalview.util.matcher.Matcher
|
0.1304347813%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.12380952412.4%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1237113412.4%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1236306712.4%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1219512212.2%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1196581212%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.119485311.9%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.11428571511.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.1096919611%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.1084337410.8%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1037735910.4%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.081632658.2%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.079055447.9%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.076923087.7%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.073094877.3%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.061983476.2%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.059701496%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0560747655.6%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.045731714.6%
|
|
|
jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
|
0.0450450444.5%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.039260973.9%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.037735853.8%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0212765952.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0196078442%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0157480311.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0132127951.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.01302931551.3%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0123966941.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0115702481.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.00932400950.9%
|
|
|
jalview.gui.PCAPanel
jalview.gui.PCAPanel
|
0.0085836910.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0076335880.8%
|
|
