|
jalview.io.gff.Gff2Helper
jalview.io.gff.Gff2Helper
|
1.0100%
|
|
|
jalview.datamodel.SequenceDummy
jalview.datamodel.SequenceDummy
|
1.0100%
|
|
|
jalview.io.gff.GffHelperFactory
jalview.io.gff.GffHelperFactory
|
0.7575%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.io.gff.ExonerateHelper
jalview.io.gff.ExonerateHelper
|
0.6190476461.9%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.550%
|
|
|
jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
|
0.550%
|
|
|
jalview.io.gff.GffHelperBase
jalview.io.gff.GffHelperBase
|
0.4834123348.3%
|
|
|
jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
|
0.447368444.7%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
|
0.4255319242.6%
|
|
|
jalview.datamodel.MappingType
jalview.datamodel.MappingType
|
0.440%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.3486238434.9%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.2698412827%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.2687526.9%
|
|
|
jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.2525%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.2469565324.7%
|
|
|
jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
|
0.2403100724%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2261904822.6%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2024169120.2%
|
|
|
jalview.io.gff.InterProScanHelper
jalview.io.gff.InterProScanHelper
|
0.220%
|
|
|
jalview.io.FeaturesFile
jalview.io.FeaturesFile
|
0.1973293719.7%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1847133818.5%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.1818181918.2%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.157706115.8%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.1538461615.4%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1314338313.1%
|
|
|
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
|
0.12512.5%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.0928571459.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0845624368.5%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.079573428%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.076923087.7%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.074829937.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0734463267.3%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.0714285757.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0337552733.4%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0213414642.1%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0196078442%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0138339921.4%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.00995024851%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
