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jalview.io.gff.Gff2Helper
jalview.io.gff.Gff2Helper
|
1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.979166797.9%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.io.gff.GffHelperFactory
jalview.io.gff.GffHelperFactory
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0.7575%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.6774193667.7%
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jalview.io.gff.ExonerateHelper
jalview.io.gff.ExonerateHelper
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0.6190476461.9%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.580838358.1%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.io.gff.GffHelperBase
jalview.io.gff.GffHelperBase
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0.4834123348.3%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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0.4705882447.1%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.4285714342.9%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.4255319242.6%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4172932241.7%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
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0.4166666641.7%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.440%
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jalview.datamodel.MappingType
jalview.datamodel.MappingType
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.util.MapList
jalview.util.MapList
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0.3756521637.6%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.3620689536.2%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.3636%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.353790635.4%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3486238434.9%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.341549334.2%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.3007812530.1%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2906976629.1%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.282738128.3%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.2725118427.3%
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jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
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0.2687526.9%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.251612925.2%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.2403100724%
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jalview.datamodel.SequenceDummy
jalview.datamodel.SequenceDummy
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0.2222222222.2%
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jalview.util.Comparison
jalview.util.Comparison
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0.2033898220.3%
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jalview.io.gff.InterProScanHelper
jalview.io.gff.InterProScanHelper
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0.220%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.1995073920%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.1970074819.7%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1858407118.6%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1818181918.2%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.1752265817.5%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1528662415.3%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.io.FeaturesFile
jalview.io.FeaturesFile
|
0.1468842814.7%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.1433691814.3%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1408450814.1%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1287128812.9%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.12333333512.3%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1196581212%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1190476211.9%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1156462611.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1114624511.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.1084337410.8%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1037735910.4%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1011029410.1%
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jalview.io.TCoffeeScoreFile
jalview.io.TCoffeeScoreFile
|
0.097276269.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.0928571459.3%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.089385478.9%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0886075948.9%
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jalview.gui.Console
jalview.gui.Console
|
0.085714298.6%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.081632658.2%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.074803157.5%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.073697597.4%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.065116286.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.061983476.2%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.061224496.1%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.0608695636.1%
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jalview.util.Platform
jalview.util.Platform
|
0.059701496%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.io.AnnotationFile
jalview.io.AnnotationFile
|
0.0593149555.9%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0554272535.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.0487804864.9%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.043545884.4%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.036063113.6%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.034482763.4%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0243902432.4%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
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jalview.util.Format
jalview.util.Format
|
0.0227743282.3%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.022641512.3%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0212765952.1%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0191570871.9%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0156494531.6%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0132127951.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.01302931551.3%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.010266941%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0082644620.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0076335880.8%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0070754720.7%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0041322310.4%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00409416570.4%
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