Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
MappingTest	37	26	4	1.0100%	Show methods

Class MappingTest

Class MappingTest	Line # 37	Total Statements 26	Complexity 4	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4040	2.02	1.01	1.0 1.0100%
testIntersectVisContigs() : void   testIntersectVisContigs() : void	5151	10.010	1.01	1.0 1.0100%
testToString() : void   testToString() : void	7171	6.06	1.01	1.0 1.0100%
testCopyConstructor() : void   testCopyConstructor() : void	9090	8.08	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.36666667	jalview.datamodel.MappingTest.testIntersectVisContigsjalview.datamodel.MappingTest.testIntersectVisContigs	1PASS
	0.3	jalview.datamodel.MappingTest.testCopyConstructorjalview.datamodel.MappingTest.testCopyConstructor	1PASS
	0.23333333	jalview.datamodel.MappingTest.testToStringjalview.datamodel.MappingTest.testToString	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import static org.testng.AssertJUnit.assertEquals;
24		import static org.testng.AssertJUnit.assertSame;
25
26		import jalview.gui.JvOptionPane;
27		import jalview.util.MapList;
28
29		import java.util.Arrays;
30
31		import org.testng.annotations.BeforeClass;
32		import org.testng.annotations.Test;
33
34		/**
35		* Test class refactored from main method
36		*/
		100% Uncovered Elements: 0 (30) Complexity: 4 Complexity Density: 0.15
37		public class MappingTest
38		{
39
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
40	1	@BeforeClass(alwaysRun = true)...
41		public void setUpJvOptionPane()
42		{
43	1	JvOptionPane.setInteractiveMode(false);
44	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
45		}
46
47		/**
48		* trite test of the intersectVisContigs method for a simple DNA -> Protein
49		* exon map and a range of visContigs
50		*/
		100% Uncovered Elements: 0 (10) Complexity: 1 Complexity Density: 0.1 1PASS
51	1	@Test(groups = { "Functional" })...
52		public void testIntersectVisContigs()
53		{
54	1	MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] {
55		1, 7 }, 3, 1);
56	1	Mapping m = new Mapping(fk);
57	1	Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(),
58		fk.getFromHighest() });
59	1	Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 });
60
61		// assertions from output values 'as is', not checked for correctness
62	1	String result = Arrays.deepToString(m_1.map.getFromRanges().toArray());
63	1	System.out.println(result);
64	1	assertEquals("[[1, 6], [8, 13], [15, 23]]", result);
65
66	1	result = Arrays.deepToString(m_2.map.getFromRanges().toArray());
67	1	System.out.println(result);
68	1	assertEquals("[[1, 6], [11, 13], [15, 20]]", result);
69		}
70
		100% Uncovered Elements: 0 (6) Complexity: 1 Complexity Density: 0.17 1PASS
71	1	@Test(groups = { "Functional" })...
72		public void testToString()
73		{
74		/*
75		* with no sequence
76		*/
77	1	MapList fk = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
78		3, 1);
79	1	Mapping m = new Mapping(fk);
80	1	assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] ", m.toString());
81
82		/*
83		* with a sequence
84		*/
85	1	SequenceI seq = new Sequence("Seq1", "");
86	1	m = new Mapping(seq, fk);
87	1	assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] Seq1", m.toString());
88		}
89
		100% Uncovered Elements: 0 (8) Complexity: 1 Complexity Density: 0.12 1PASS
90	1	@Test(groups = { "Functional" })...
91		public void testCopyConstructor()
92		{
93	1	MapList ml = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
94		3, 1);
95	1	SequenceI seq = new Sequence("seq1", "agtacg");
96	1	Mapping m = new Mapping(seq, ml);
97	1	m.setMappedFromId("abc");
98	1	Mapping copy = new Mapping(m);
99	1	assertEquals("abc", copy.getMappedFromId());
100	1	assertEquals(ml, copy.getMap());
101	1	assertSame(seq, copy.getTo());
102		}
103		}