Clover icon

Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST

Package jalview.datamodel

 

Code metrics

2,816
5,213
923
86
73
23,493
13,414
2,798
0.54
5.65
10.73
3.03
Package
jalview.datamodel jalview.datamodel 73.0 73 3.0314193 3.03 0.7340259
0.734025973.4%
 
Class
AllColsCollection AllColsCollection 4.0 4 1.0 1 0.0
0.00%
AllRowsCollection AllRowsCollection 5.0 5 1.0 1 0.0
0.00%
BinarySequence BinarySequence 8.0 8 2.75 2.75 0.0
0.00%
BinarySequence.InvalidSequenceTypeException BinarySequence.InvalidSequenceTypeException 1.0 1 1.0 1 0.0
0.00%
CigarCigar CigarCigar 2.0 2 2.5 2.5 0.0
0.00%
Provenance Provenance 3.0 3 1.3333334 1.33 0.0
0.00%
ProvenanceEntry ProvenanceEntry 5.0 5 1.0 1 0.0
0.00%
RnaViewerModel RnaViewerModel 1.0 1 1.0 1 0.0
0.00%
SFSortByBegin SFSortByBegin 1.0 1 1.0 1 0.0
0.00%
SecondaryStructureAnnotation SecondaryStructureAnnotation 3.0 3 1.3333334 1.33 0.0
0.00%
VisibleColsCollection VisibleColsCollection 4.0 4 1.0 1 0.0
0.00%
VisibleRowsCollection VisibleRowsCollection 5.0 5 1.0 1 0.0
0.00%
AlignmentOrder AlignmentOrder 15.0 15 2.2666667 2.27 0.042105265
0.0421052654.2%
Point Point 4.0 4 2.5 2.5 0.1
0.110%
FeatureProperties FeatureProperties 2.0 2 2.5 2.5 0.33333334
0.3333333433.3%
AlignmentView AlignmentView 25.0 25 6.88 6.88 0.34323922
0.3432392234.3%
AlignmentView.ScGroup AlignmentView.ScGroup 4.0 4 1.5 1.5 0.42105263
0.4210526342.1%
SequencePoint SequencePoint 5.0 5 1.0 1 0.45454547
0.4545454745.5%
SequenceNode SequenceNode 9.0 9 1.7777778 1.78 0.46341464
0.4634146446.3%
CigarArray CigarArray 12.0 12 4.1666665 4.17 0.48469388
0.4846938848.5%
BinaryNode BinaryNode 19.0 19 1.5789474 1.58 0.53333336
0.5333333653.3%
SequenceGroup SequenceGroup 87.0 87 2.091954 2.09 0.548552
0.54855254.9%
AlignedCodonFrame.SequenceToSequenceMapping AlignedCodonFrame.SequenceToSequenceMapping 6.0 6 1.5 1.5 0.5833333
0.583333358.3%
ColumnSelection.IntList ColumnSelection.IntList 18.0 18 1.8333334 1.83 0.58878505
0.5887850558.9%
SequenceCursor SequenceCursor 5.0 5 1.6 1.6 0.6
0.660%
AlignExportSettingsAdapter AlignExportSettingsAdapter 11.0 11 1.0 1 0.61538464
0.6153846461.5%
AlignmentExportData AlignmentExportData 7.0 7 1.0 1 0.625
0.62562.5%
StructureViewerModel.StructureData StructureViewerModel.StructureData 7.0 7 1.0 1 0.625
0.62562.5%
Alignment Alignment 93.0 93 3.1505377 3.15 0.6361849
0.636184963.6%
Range Range 6.0 6 1.1666666 1.17 0.6666667
0.666666766.7%
AlignedCodon AlignedCodon 5.0 5 2.2 2.2 0.6969697
0.696969769.7%
SeqCigar SeqCigar 19.0 19 4.7894735 4.79 0.70731705
0.7073170570.7%
Mapping Mapping 24.0 24 3.2083333 3.21 0.71308017
0.7130801771.3%
Annotation Annotation 6.0 6 3.0 3 0.71428573
0.7142857371.4%
AlignmentAnnotation AlignmentAnnotation 50.0 50 5.96 5.96 0.7407878
0.740787874.1%
PDBEntry.Type PDBEntry.Type 5.0 5 1.2 1.2 0.75
0.7575%
GraphLine GraphLine 3.0 3 3.3333333 3.33 0.7586207
0.758620775.9%
StructureViewerModel StructureViewerModel 21.0 21 1.0 1 0.8
0.880%
CigarBase CigarBase 13.0 13 7.6153846 7.62 0.820059
0.82005982%
Profiles Profiles 4.0 4 2.0 2 0.8333333
0.833333383.3%
AlignedCodonFrame AlignedCodonFrame 28.0 28 3.4285715 3.43 0.86333334
0.8633333486.3%
SequenceFeature SequenceFeature 36.0 36 2.6388888 2.64 0.8637993
0.863799386.4%
Profile Profile 9.0 9 1.3333334 1.33 0.87096775
0.8709677587.1%
ColumnSelection ColumnSelection 22.0 22 4.0 4 0.8719008
0.871900887.2%
SearchResults SearchResults 11.0 11 2.909091 2.91 0.875
0.87587.5%
SearchResults.Match SearchResults.Match 8.0 8 1.625 1.62 0.8974359
0.897435989.7%
RangeIterator RangeIterator 6.0 6 2.0 2 0.9189189
0.918918991.9%
Mapping.AlignedCodonIterator Mapping.AlignedCodonIterator 8.0 8 3.0 3 0.92045456
0.9204545692%
AlignmentAnnotation.AnnotCharSequence AlignmentAnnotation.AnnotCharSequence 6.0 6 2.8333333 2.83 0.9259259
0.925925992.6%
MappedFeatures MappedFeatures 5.0 5 6.0 6 0.9298246
0.929824693%
GeneLocus GeneLocus 7.0 7 1.1428572 1.14 0.9375
0.937593.8%
Sequence Sequence 82.0 82 3.9512196 3.95 0.9375
0.937593.8%
DBRefEntry DBRefEntry 21.0 21 3.0 3 0.9457364
0.945736494.6%
PDBEntry PDBEntry 23.0 23 2.8695652 2.87 0.955414
0.95541495.5%
RangeElementsIterator RangeElementsIterator 5.0 5 2.0 2 0.96875
0.9687596.9%
HiddenSequences HiddenSequences 15.0 15 3.9333334 3.93 0.977169
0.97716997.7%
HiddenColumns HiddenColumns 33.0 33 2.969697 2.97 0.9976415
0.997641599.8%
AllColsIterator AllColsIterator 4.0 4 1.25 1.25 1.0
1.0100%
AllRowsIterator AllRowsIterator 4.0 4 1.25 1.25 1.0
1.0100%
DBRefSource DBRefSource 3.0 3 2.3333333 2.33 1.0
1.0100%
HiddenColumnsCursor HiddenColumnsCursor 8.0 8 2.75 2.75 1.0
1.0100%
HiddenCursorPosition HiddenCursorPosition 3.0 3 1.0 1 1.0
1.0100%
MappingType MappingType 7.0 7 1.0 1 1.0
1.0100%
ResidueCount ResidueCount 23.0 23 3.3913043 3.39 1.0
1.0100%
ResidueCount.SymbolCounts ResidueCount.SymbolCounts 1.0 1 1.0 1 1.0
1.0100%
SFSortByEnd SFSortByEnd 1.0 1 1.0 1 1.0
1.0100%
Sequence.DBModList Sequence.DBModList 1.0 1 1.0 1 1.0
1.0100%
SequenceDummy SequenceDummy 4.0 4 1.0 1 1.0
1.0100%
StartRegionIterator StartRegionIterator 4.0 4 2.5 2.5 1.0
1.0100%
VisibleContigsIterator VisibleContigsIterator 4.0 4 2.75 2.75 1.0
1.0100%
VisibleRowsIterator VisibleRowsIterator 4.0 4 2.75 2.75 1.0
1.0100%
This package contains 15 empty classes or interfaces which are not listed.
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.