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package jalview.datamodel; |
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import java.awt.Color; |
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@author |
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@version |
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| 46.3% |
Uncovered Elements: 22 (41) |
Complexity: 16 |
Complexity Density: 0.67 |
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public class SequenceNode extends BinaryNode |
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{ |
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public double dist; |
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public int count; |
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public double height; |
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public float ycount; |
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public Color color = Color.black; |
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public boolean dummy = false; |
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private boolean placeholder = false; |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public SequenceNode()... |
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{ |
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super(); |
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} |
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@param |
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@param |
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@param |
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@param |
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| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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public SequenceNode(Object val, SequenceNode parent, float dist,... |
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String name) |
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{ |
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super(val, parent, name); |
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this.dist = dist; |
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} |
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@param |
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@param |
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@param |
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@param |
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@param |
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@param |
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| 100% |
Uncovered Elements: 0 (4) |
Complexity: 1 |
Complexity Density: 0.25 |
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public SequenceNode(Object val, SequenceNode parent, String name,... |
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float dist, int bootstrap, boolean dummy) |
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{ |
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super(val, parent, name); |
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this.dist = dist; |
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this.bootstrap = bootstrap; |
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this.dummy = dummy; |
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} |
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@param |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public boolean isDummy()... |
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{ |
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return dummy; |
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} |
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@param |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public boolean isPlaceholder()... |
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{ |
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return placeholder; |
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} |
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@param |
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@return |
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| 0% |
Uncovered Elements: 3 (3) |
Complexity: 1 |
Complexity Density: 0.33 |
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public boolean setDummy(boolean newstate)... |
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{ |
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boolean oldstate = dummy; |
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dummy = newstate; |
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return oldstate; |
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} |
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@param |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void setPlaceholder(boolean Placeholder)... |
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{ |
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this.placeholder = Placeholder; |
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} |
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| 83.3% |
Uncovered Elements: 1 (6) |
Complexity: 3 |
Complexity Density: 0.75 |
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public SequenceNode AscendTree()... |
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{ |
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SequenceNode c = this; |
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do |
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{ |
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c = (SequenceNode) c.parent(); |
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} while ((c != null) && c.dummy); |
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return c; |
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} |
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@return |
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| 0% |
Uncovered Elements: 13 (13) |
Complexity: 6 |
Complexity Density: 0.86 |
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public boolean isSequenceLabel()... |
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{ |
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if (name != null && name.length() > 0) |
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{ |
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for (int c = 0, s = name.length(); c < s; c++) |
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{ |
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char q = name.charAt(c); |
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if ('0' <= q && q <= '9') |
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{ |
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continue; |
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} |
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return true; |
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} |
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} |
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return false; |
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} |
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} |