Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
VisibleRowsCollection	27	7	5	0.00%	Show methods

Class VisibleRowsCollection

Class VisibleRowsCollection	Line # 27	Total Statements 7	Complexity 5	TOTAL Coverage 0.00%
VisibleRowsCollection(int,int,AlignmentI)   VisibleRowsCollection(int,int,AlignmentI)	3535	3.03	1.01	0.0 0.00%
iterator() : Iterator<Integer>   iterator() : Iterator<Integer>	4242	1.01	1.01	0.0 0.00%
isHidden(int) : boolean   isHidden(int) : boolean	4848	1.01	1.01	0.0 0.00%
getSequence(int) : SequenceI   getSequence(int) : SequenceI	5454	1.01	1.01	0.0 0.00%
hasHidden() : boolean   hasHidden() : boolean	6060	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import jalview.api.AlignmentRowsCollectionI;
24
25		import java.util.Iterator;
26
		0% Uncovered Elements: 12 (12) Complexity: 5 Complexity Density: 0.71
27		public class VisibleRowsCollection implements AlignmentRowsCollectionI
28		{
29		int start;
30
31		int end;
32
33		AlignmentI alignment;
34
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
35	0	public VisibleRowsCollection(int s, int e, AlignmentI al)...
36		{
37	0	start = s;
38	0	end = e;
39	0	alignment = al;
40		}
41
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
42	0	@Override...
43		public Iterator<Integer> iterator()
44		{
45	0	return new VisibleRowsIterator(start, end, alignment);
46		}
47
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	@Override...
49		public boolean isHidden(int seq)
50		{
51	0	return false;
52		}
53
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
54	0	@Override...
55		public SequenceI getSequence(int seq)
56		{
57	0	return alignment.getSequenceAtAbsoluteIndex(seq);
58		}
59
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
60	0	@Override...
61		public boolean hasHidden()
62		{
63	0	return false;
64		}
65		}