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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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1.0100%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings
jalview.xml.binding.jalview.JalviewModel.FeatureSettings
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
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1.0100%
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jalview.xml.binding.jalview.Pdbentry
jalview.xml.binding.jalview.Pdbentry
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1.0100%
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jalview.xml.binding.jalview.Pdbentry.Property
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
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0.911764791.2%
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jalview.xml.binding.jalview.SequenceSet
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.866995186.7%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.xml.binding.jalview.JalviewModel.Viewport
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jalview.xml.binding.jalview.Annotation
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jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
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jalview.datamodel.Profiles
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jalview.xml.binding.jalview.JalviewModel
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jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.xml.binding.jalview.JalviewModel.JSeq
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0.770833377.1%
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jalview.xml.binding.jalview.Sequence.DBRef
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0.7575%
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jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.gui.FeatureRenderer
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jalview.xml.binding.jalview.Sequence
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.workers.ConservationThread
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0.7068965470.7%
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jalview.gui.JalviewAppender
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0.770%
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jalview.ext.jmol.JmolParser
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jalview.util.CaseInsensitiveString
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jalview.renderer.ScaleRenderer
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jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FeatureSettingsAdapter
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
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jalview.io.FileLoader
jalview.io.FileLoader
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0.46240646.2%
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jalview.ws.jws2.MsaWSClient
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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jalview.datamodel.HiddenCursorPosition
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.schemes.HydrophobicColourScheme
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jalview.schemes.HelixColourScheme
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jalview.schemes.TurnColourScheme
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jalview.schemes.StrandColourScheme
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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jalview.io.StructureFile
jalview.io.StructureFile
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0.384615438.5%
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jalview.renderer.AnnotationRenderer
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0.3838280438.4%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.376558637.7%
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jalview.gui.AlignmentPanel
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0.3677419436.8%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.datamodel.ResidueCount
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jalview.workers.AlignCalcWorker
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jalview.io.AlignFile
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jalview.datamodel.features.SequenceFeatures
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.3239436732.4%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
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0.3225806432.3%
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jalview.util.Format
jalview.util.Format
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0.3209109632.1%
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mc_view.PDBChain
mc_view.PDBChain
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0.320359332%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.3142857331.4%
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jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
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0.312531.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.3103448231%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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jalview.gui.IdCanvas
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0.2950191529.5%
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jalview.analysis.AAFrequency
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0.2906976629.1%
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.2840073428.4%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.ws.jws2.JabaPreset
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0.2727272827.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2528735725.3%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2473118324.7%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.243328124.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.2336633723.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2202380922%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2142857221.4%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.2139037421.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2133726621.3%
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jalview.util.Comparison
jalview.util.Comparison
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0.2090395520.9%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2075471720.8%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2053571520.5%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.201550420.2%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1968992219.7%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1877022718.8%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.1818181918.2%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1652173816.5%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
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0.1555555615.6%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1442687814.4%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1392801313.9%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1333333413.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.gui.Console
jalview.gui.Console
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0.12380952412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.1229050312.3%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.1228615912.3%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1226415112.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1219512212.2%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.12171312.2%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.11428571511.4%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.1084337410.8%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.10256410410.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.095482549.5%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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0.0947368449.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0945121949.5%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.081632658.2%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.076923087.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.061983476.2%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.util.Platform
jalview.util.Platform
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0.059701496%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0560747655.6%
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jalview.bin.Cache
jalview.bin.Cache
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0.0554272535.5%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0450450444.5%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.0416666684.2%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.037735853.8%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0212765952.1%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0196078442%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.019230771.9%
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|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0157480311.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0132127951.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.01302931551.3%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0123966941.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0115702481.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.00932400950.9%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.009023790.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0076335880.8%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0044843050.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
