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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.979166797.9%
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jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.8694581486.9%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
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jalview.structure.AtomSpecModel
jalview.structure.AtomSpecModel
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0.833333383.3%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
|
0.7575%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
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jalview.gui.JalviewAppender
jalview.gui.JalviewAppender
|
0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.696969769.7%
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jalview.jbgui.GStructureViewer
jalview.jbgui.GStructureViewer
|
0.689655269%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
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jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.6774193667.7%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.6050955760.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.595238159.5%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.5788423457.9%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.5674676356.7%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.565217456.5%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.5542168655.4%
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mc_view.PDBChain
mc_view.PDBChain
|
0.5179640751.8%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.5095541551%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FeatureSettingsAdapter
jalview.schemes.FeatureSettingsAdapter
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.4838709548.4%
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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0.4705882447.1%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.4551724245.5%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.4482758644.8%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4398496244%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.4153846241.5%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.4129032241.3%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.404761940.5%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.gui.AppJmol
jalview.gui.AppJmol
|
0.387832738.8%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.3720379237.2%
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.354260135.4%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.353790635.4%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.351254535.1%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.3412698534.1%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.3248407532.5%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.3227383832.3%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3203732432%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3187096731.9%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.3142857331.4%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.3007812530.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.2973316329.7%
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2886029528.9%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.2852112728.5%
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jalview.util.Comparison
jalview.util.Comparison
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0.2824858728.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2790697827.9%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.2772277327.7%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.2727272827.3%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.262526.2%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.2608695626.1%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.25388625.4%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2528735725.3%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.2444444424.4%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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0.2439024424.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.241379324.1%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.2336633723.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2323943723.2%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2202380922%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.2139037421.4%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.2135007821.4%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2061512920.6%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2053571520.5%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.1818181918.2%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1803278618%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.176470617.6%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1666666716.7%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.1538461615.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1524090515.2%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.1333333413.3%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1316205613.2%
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jalview.ext.jmol.JmolCommands
jalview.ext.jmol.JmolCommands
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0.1304347813%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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0.1293103412.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.gui.Console
jalview.gui.Console
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0.12380952412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.1229050312.3%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1190476211.9%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.1162790711.6%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.11428571511.4%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.1095890411%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.10679611610.7%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.10256410410.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.098591559.9%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
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jalview.gui.Desktop
jalview.gui.Desktop
|
0.090909099.1%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.088414638.8%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
|
0.081967218.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.081632658.2%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.077894747.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.076923087.7%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.0759689967.6%
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jalview.util.Platform
jalview.util.Platform
|
0.074626867.5%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.063829796.4%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.061983476.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.0608695636.1%
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jalview.bin.Cache
jalview.bin.Cache
|
0.060046196%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.util.MapList
jalview.util.MapList
|
0.0539130425.4%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0498084285%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.0487804864.9%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0339622653.4%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0319148943.2%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0297741283%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0288461542.9%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0235849062.4%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0210970472.1%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0196078442%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.019230771.9%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0157480311.6%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0156494531.6%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0132127951.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.01302931551.3%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0115702481.2%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.00932400950.9%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
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|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.009023790.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0076335880.8%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0041322310.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00409416570.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00103039670.1%
|
|
