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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.Sequence.DBRef
jalview.xml.binding.jalview.Sequence.DBRef
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1.0100%
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jalview.xml.binding.jalview.MapListType
jalview.xml.binding.jalview.MapListType
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1.0100%
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jalview.xml.binding.jalview.MapListType.MapListFrom
jalview.xml.binding.jalview.MapListType.MapListFrom
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1.0100%
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jalview.xml.binding.jalview.MapListType.MapListTo
jalview.xml.binding.jalview.MapListType.MapListTo
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.979166797.9%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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0.916666791.7%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
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0.87587.5%
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
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0.8571428785.7%
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jalview.viewmodel.styles.ViewStyle
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0.8476562584.8%
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jalview.xml.binding.jalview.JalviewModel.Viewport
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jalview.datamodel.Profiles
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jalview.datamodel.VisibleContigsIterator
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0.8085106680.9%
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jalview.datamodel.Profile
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jalview.xml.binding.jalview.Annotation
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0.798076979.8%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
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0.7575%
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jalview.xml.binding.jalview.JalviewModel.JSeq
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0.7575%
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jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.gui.JalviewAppender
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0.770%
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jalview.workers.ConsensusThread
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jalview.datamodel.StartRegionIterator
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.SequenceFetcher
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jalview.schemes.ResidueColourScheme
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jalview.gui.IdCanvas
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jalview.renderer.ScaleRenderer
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jalview.workers.AlignCalcManager
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.550%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.550%
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jalview.xml.binding.jalview.Mapping
jalview.xml.binding.jalview.Mapping
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.ws.jws2.MsaWSClient
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0.4551724245.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.3921971339.2%
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jalview.datamodel.Range
jalview.datamodel.Range
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0.388888938.9%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3808139638.1%
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jalview.datamodel.GeneLocus
jalview.datamodel.GeneLocus
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0.37537.5%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3684210536.8%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.365161336.5%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.3571428735.7%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.353790635.4%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3486238434.9%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.346278334.6%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.3372798333.7%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.3341232233.4%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.3282442732.8%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.3204225332%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.3178294631.8%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.io.FileParse
jalview.io.FileParse
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2727272827.3%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.2547770725.5%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2528735725.3%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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0.2439024424.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2377358523.8%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.2336633723.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.util.Comparison
jalview.util.Comparison
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0.2203389922%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2202380922%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2182890921.8%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2142857221.4%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.1818181918.2%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1818181918.2%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.1581395415.8%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.1538461615.4%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1533646315.3%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1446640314.5%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.1423125914.2%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.1393442613.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.1239669412.4%
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jalview.gui.Console
jalview.gui.Console
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0.12380952412.4%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1237113412.4%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1219512212.2%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1196581212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.11428571511.4%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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0.1139240511.4%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.1135303211.4%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.1084337410.8%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1037735910.4%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.1006097610.1%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.089385478.9%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.084905668.5%
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jalview.util.MapList
jalview.util.MapList
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0.0834782658.3%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.08347538.3%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.081632658.2%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.076923087.7%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.068965526.9%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.065934076.6%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.063926946.4%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.061983476.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.util.Platform
jalview.util.Platform
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0.059701496%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0560747655.6%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.053811665.4%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.051724145.2%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.045317224.5%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0450450444.5%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.0416666684.2%
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jalview.bin.Cache
jalview.bin.Cache
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0.039260973.9%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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0.0294736852.9%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.0286738352.9%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.0259740262.6%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.0252.5%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.0244498772.4%
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jalview.util.Format
jalview.util.Format
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0.0227743282.3%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0212765952.1%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0196078442%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.0184842891.8%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0157480311.6%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.0152091251.5%
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jalview.gui.TreePanel
jalview.gui.TreePanel
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0.0144404331.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0132127951.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.01302931551.3%
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|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0123966941.2%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0115702481.2%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.00932400950.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
