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  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.schemes

File ZappoColourScheme.java

 

Coverage histogram

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0% of files have more coverage

Code metrics

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Classes

Class Line # Actions
ZappoColourScheme 35 4 4 0
1.0100%
 

Contributing tests

This file is covered by 85 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    import jalview.datamodel.AnnotatedCollectionI;
24    import jalview.datamodel.SequenceCollectionI;
25    import jalview.datamodel.SequenceI;
26   
27    import java.util.Map;
28   
29    /**
30    * DOCUMENT ME!
31    *
32    * @author $author$
33    * @version $Revision$
34    */
 
35    public class ZappoColourScheme extends ResidueColourScheme
36    {
37    /**
38    * Creates a new ZappoColourScheme object.
39    */
 
40  937 toggle public ZappoColourScheme()
41    {
42  937 super(ResidueProperties.aaIndex, ResidueProperties.zappo);
43    }
44   
 
45  410 toggle @Override
46    public boolean isPeptideSpecific()
47    {
48  410 return true;
49    }
50   
 
51  221 toggle @Override
52    public String getSchemeName()
53    {
54  221 return JalviewColourScheme.Zappo.toString();
55    }
56   
57    /**
58    * Returns a new instance of this colour scheme with which the given data may
59    * be coloured
60    */
 
61  28 toggle @Override
62    public ColourSchemeI getInstance(AnnotatedCollectionI coll,
63    Map<SequenceI, SequenceCollectionI> hrs)
64    {
65  28 return new ZappoColourScheme();
66    }
67    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.