|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9772727597.7%
|
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|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.833333383.3%
|
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jalview.analysis.scoremodels.FeatureDistanceModel
jalview.analysis.scoremodels.FeatureDistanceModel
|
0.821428682.1%
|
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|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.81773481.8%
|
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
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jalview.util.SetUtils
jalview.util.SetUtils
|
0.740740774.1%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.701030970.1%
|
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jalview.gui.JalviewAppender
jalview.gui.JalviewAppender
|
0.770%
|
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|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.6774193667.7%
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.577777857.8%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.574167557.4%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
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jalview.util.MessageManager
jalview.util.MessageManager
|
0.5357142753.6%
|
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
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jalview.datamodel.features.FeatureStore.SearchCriterion
jalview.datamodel.features.FeatureStore.SearchCriterion
|
0.550%
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|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
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|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
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jalview.io.PfamFile
jalview.io.PfamFile
|
0.484848548.5%
|
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.4137931241.4%
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jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
|
0.405405440.5%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.440%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
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jalview.analysis.scoremodels.SimilarityParams
jalview.analysis.scoremodels.SimilarityParams
|
0.384615438.5%
|
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.3606557336.1%
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jalview.io.FileFormats
jalview.io.FileFormats
|
0.3636%
|
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jalview.io.AlignFile
jalview.io.AlignFile
|
0.3571428735.7%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3571428735.7%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.3454987734.5%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3321299633.2%
|
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.3204225332%
|
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jalview.io.FileLoader
jalview.io.FileLoader
|
0.309090930.9%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.3048780630.5%
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jalview.datamodel.CigarArray
jalview.datamodel.CigarArray
|
0.2959183829.6%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.2957393529.6%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.2900763529%
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|
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2735562327.4%
|
|
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.2541087325.4%
|
|
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
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jalview.datamodel.SeqCigar
jalview.datamodel.SeqCigar
|
0.2286585422.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2278589922.8%
|
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jalview.io.FileParse
jalview.io.FileParse
|
0.2118959121.2%
|
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.2067039220.7%
|
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.2051282120.5%
|
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2001845120%
|
|
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1818181918.2%
|
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.1766723817.7%
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jalview.util.Comparison
jalview.util.Comparison
|
0.1638418116.4%
|
|
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jalview.util.Format
jalview.util.Format
|
0.1490683314.9%
|
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
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jalview.datamodel.CigarBase
jalview.datamodel.CigarBase
|
0.1415929214.2%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.1401869214%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1365902313.7%
|
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.1304347813%
|
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1287128812.9%
|
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.1237113412.4%
|
|
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.1219512212.2%
|
|
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jalview.io.FileFormat
jalview.io.FileFormat
|
0.1196581212%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1156462611.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.1136363711.4%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.10937510.9%
|
|
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.1084337410.8%
|
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jalview.datamodel.AlignmentView.ScGroup
jalview.datamodel.AlignmentView.ScGroup
|
0.1052631610.5%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1037735910.4%
|
|
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jalview.analysis.SeqsetUtils
jalview.analysis.SeqsetUtils
|
0.1027397310.3%
|
|
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
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jalview.util.Platform
jalview.util.Platform
|
0.090909099.1%
|
|
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.090909099.1%
|
|
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jalview.datamodel.AlignmentView
jalview.datamodel.AlignmentView
|
0.0890207748.9%
|
|
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.086199928.6%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.085106388.5%
|
|
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.080402018%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0778523467.8%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.067264576.7%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.0649895156.5%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0566037745.7%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.054838715.5%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0518053365.2%
|
|
|
jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
|
0.049783555%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.043831174.4%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0433436524.3%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.032564453.3%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.029090912.9%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.028925622.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.math.Matrix
jalview.math.Matrix
|
0.025500912.6%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.0235294122.4%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0215053762.2%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0184842891.8%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.018315021.8%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.016750421.7%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0167364011.7%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0147783251.5%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0119863011.2%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.01024590151%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.0100502511%
|
|
|
jalview.jbgui.GDesktop
jalview.jbgui.GDesktop
|
0.0096153851%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0077821010.8%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.0040858020.4%
|
|
