Classes

Class	Line #	Total Statements	Complexity	Uncovered Elements	TOTAL Coverage	Actions
SeqPanelTest	33	22	3	0	1.0100%	Show methods

Class SeqPanelTest

Class SeqPanelTest	Line # 33	Total Statements 22	Complexity 3	Uncovered Elements 0	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3737	2.02	1.01	0.00	1.0 1.0100%
testSetStatusReturnsNearestResiduePosition() : void   testSetStatusReturnsNearestResiduePosition() : void	4343	13.013	1.01	0.00	1.0 1.0100%
testAmbiguousAminoAcidGetsStatusMessage() : void   testAmbiguousAminoAcidGetsStatusMessage() : void	7575	7.07	1.01	0.00	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.56	jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition	1PASS
	0.32	jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import static org.testng.Assert.assertEquals;
24
25		import jalview.datamodel.Alignment;
26		import jalview.datamodel.AlignmentI;
27		import jalview.datamodel.Sequence;
28		import jalview.datamodel.SequenceI;
29
30		import org.testng.annotations.BeforeClass;
31		import org.testng.annotations.Test;
32
		100% Uncovered Elements: 0 (25) Complexity: 3 Complexity Density: 0.14
33		public class SeqPanelTest
34		{
35		AlignFrame af;
36
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
37	1	@BeforeClass(alwaysRun = true)...
38		public void setUpJvOptionPane()
39		{
40	1	JvOptionPane.setInteractiveMode(false);
41	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
42		}
		100% Uncovered Elements: 0 (13) Complexity: 1 Complexity Density: 0.08 1PASS
43	1	@Test(groups = "Functional")...
44		public void testSetStatusReturnsNearestResiduePosition()
45		{
46	1	SequenceI seq1 = new Sequence("Seq1", "AACDE");
47	1	SequenceI seq2 = new Sequence("Seq2", "AA--E");
48	1	AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
49	1	AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
50		al.getHeight());
51	1	AlignmentI visAl = alignFrame.getViewport().getAlignment();
52
53		// Test either side of gap
54	1	assertEquals(
55		alignFrame.alignPanel.getSeqPanel().setStatusMessage(
56		visAl.getSequenceAt(1), 1, 1), 2);
57	1	assertEquals(alignFrame.statusBar.getText(),
58		"Sequence 2 ID: Seq2 Residue: ALA (2)");
59	1	assertEquals(
60		alignFrame.alignPanel.getSeqPanel().setStatusMessage(
61		visAl.getSequenceAt(1), 4, 1), 3);
62	1	assertEquals(alignFrame.statusBar.getText(),
63		"Sequence 2 ID: Seq2 Residue: GLU (3)");
64		// no status message at a gap, returns next residue position to the right
65	1	assertEquals(
66		alignFrame.alignPanel.getSeqPanel().setStatusMessage(
67		visAl.getSequenceAt(1), 2, 1), 3);
68	1	assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
69	1	assertEquals(
70		alignFrame.alignPanel.getSeqPanel().setStatusMessage(
71		visAl.getSequenceAt(1), 3, 1), 3);
72	1	assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2");
73		}
74
		100% Uncovered Elements: 0 (7) Complexity: 1 Complexity Density: 0.14 1PASS
75	1	@Test(groups = "Functional")...
76		public void testAmbiguousAminoAcidGetsStatusMessage()
77		{
78	1	SequenceI seq1 = new Sequence("Seq1", "ABCDE");
79	1	SequenceI seq2 = new Sequence("Seq2", "AB--E");
80	1	AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 });
81	1	AlignFrame alignFrame = new AlignFrame(al, al.getWidth(),
82		al.getHeight());
83	1	AlignmentI visAl = alignFrame.getViewport().getAlignment();
84
85	1	assertEquals(
86		alignFrame.alignPanel.getSeqPanel().setStatusMessage(
87		visAl.getSequenceAt(1), 1, 1), 2);
88	1	assertEquals(alignFrame.statusBar.getText(),
89		"Sequence 2 ID: Seq2 Residue: B (2)");
90		}
91		}