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package jalview.gui; |
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import static org.testng.Assert.assertEquals; |
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import jalview.datamodel.Alignment; |
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import jalview.datamodel.AlignmentI; |
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import jalview.datamodel.Sequence; |
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import jalview.datamodel.SequenceI; |
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import org.testng.annotations.BeforeClass; |
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import org.testng.annotations.Test; |
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| 100% |
Uncovered Elements: 0 (25) |
Complexity: 3 |
Complexity Density: 0.14 |
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public class SeqPanelTest |
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{ |
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AlignFrame af; |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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@BeforeClass(alwaysRun = true)... |
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public void setUpJvOptionPane() |
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{ |
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JvOptionPane.setInteractiveMode(false); |
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JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION); |
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} |
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| 100% |
Uncovered Elements: 0 (13) |
Complexity: 1 |
Complexity Density: 0.08 |
1PASS
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@Test(groups = "Functional")... |
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public void testSetStatusReturnsNearestResiduePosition() |
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{ |
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SequenceI seq1 = new Sequence("Seq1", "AACDE"); |
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SequenceI seq2 = new Sequence("Seq2", "AA--E"); |
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AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 }); |
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AlignFrame alignFrame = new AlignFrame(al, al.getWidth(), |
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al.getHeight()); |
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AlignmentI visAl = alignFrame.getViewport().getAlignment(); |
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assertEquals( |
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alignFrame.alignPanel.getSeqPanel().setStatusMessage( |
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visAl.getSequenceAt(1), 1, 1), 2); |
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assertEquals(alignFrame.statusBar.getText(), |
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"Sequence 2 ID: Seq2 Residue: ALA (2)"); |
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assertEquals( |
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alignFrame.alignPanel.getSeqPanel().setStatusMessage( |
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visAl.getSequenceAt(1), 4, 1), 3); |
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assertEquals(alignFrame.statusBar.getText(), |
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"Sequence 2 ID: Seq2 Residue: GLU (3)"); |
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assertEquals( |
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alignFrame.alignPanel.getSeqPanel().setStatusMessage( |
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visAl.getSequenceAt(1), 2, 1), 3); |
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assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2"); |
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assertEquals( |
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alignFrame.alignPanel.getSeqPanel().setStatusMessage( |
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visAl.getSequenceAt(1), 3, 1), 3); |
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assertEquals(alignFrame.statusBar.getText(), "Sequence 2 ID: Seq2"); |
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} |
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| 100% |
Uncovered Elements: 0 (7) |
Complexity: 1 |
Complexity Density: 0.14 |
1PASS
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@Test(groups = "Functional")... |
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public void testAmbiguousAminoAcidGetsStatusMessage() |
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{ |
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SequenceI seq1 = new Sequence("Seq1", "ABCDE"); |
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SequenceI seq2 = new Sequence("Seq2", "AB--E"); |
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AlignmentI al = new Alignment(new SequenceI[] { seq1, seq2 }); |
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AlignFrame alignFrame = new AlignFrame(al, al.getWidth(), |
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al.getHeight()); |
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AlignmentI visAl = alignFrame.getViewport().getAlignment(); |
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assertEquals( |
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alignFrame.alignPanel.getSeqPanel().setStatusMessage( |
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visAl.getSequenceAt(1), 1, 1), 2); |
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assertEquals(alignFrame.statusBar.getText(), |
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"Sequence 2 ID: Seq2 Residue: B (2)"); |
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} |
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} |