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jalviewX

  1. Project Clover database Wed Oct 31 2018 15:13:58 GMT
  2. Package jalview.schemes

File BuriedColourScheme.java

 

Coverage histogram

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0% of files have more coverage

Code metrics

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Classes

Class Line # Actions
BuriedColourScheme 36 5 5 0
1.0100%
 

Contributing tests

This file is covered by 81 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    import jalview.datamodel.AnnotatedCollectionI;
24    import jalview.datamodel.SequenceCollectionI;
25    import jalview.datamodel.SequenceI;
26   
27    import java.awt.Color;
28    import java.util.Map;
29   
30    /**
31    * DOCUMENT ME!
32    *
33    * @author $author$
34    * @version $Revision$
35    */
 
36    public class BuriedColourScheme extends ScoreColourScheme
37    {
38    /**
39    * Creates a new BuriedColourScheme object.
40    */
 
41  14 toggle public BuriedColourScheme()
42    {
43  14 super(ResidueProperties.aaIndex, ResidueProperties.buried,
44    ResidueProperties.buriedmin, ResidueProperties.buriedmax);
45    }
46   
47    /**
48    * DOCUMENT ME!
49    *
50    * @param c
51    * DOCUMENT ME!
52    *
53    * @return DOCUMENT ME!
54    */
 
55  336 toggle @Override
56    public Color makeColour(float c)
57    {
58  336 return new Color(0, (float) (1.0 - c), c);
59    }
60   
 
61  410 toggle @Override
62    public boolean isPeptideSpecific()
63    {
64  410 return true;
65    }
66   
 
67  231 toggle @Override
68    public String getSchemeName()
69    {
70  231 return JalviewColourScheme.Buried.toString();
71    }
72   
73    /**
74    * Returns a new instance of this colour scheme with which the given data may
75    * be coloured
76    */
 
77  7 toggle @Override
78    public ColourSchemeI getInstance(AnnotatedCollectionI coll,
79    Map<SequenceI, SequenceCollectionI> hrs)
80    {
81  7 return new BuriedColourScheme();
82    }
83    }
  • Report generated by OpenClover v 4.2.1 on Wed Oct 31 2018 15:15:54 GMT using coverage data from Wed Oct 31 2018 15:15:47 GMT.
  • Clover free edition.