|
0.5285714
|
jalview.datamodel.AlignmentAnnotationTests.testLiftOverjalview.datamodel.AlignmentAnnotationTests.testLiftOver
|
1PASS
|
|
|
0.42857143
|
jalview.io.StockholmFileTest.testAnnotationEquivalencejalview.io.StockholmFileTest.testAnnotationEquivalence
|
1PASS
|
|
|
0.34285715
|
jalview.io.Jalview2xmlTests.viewRefPdbAnnotationjalview.io.Jalview2xmlTests.viewRefPdbAnnotation
|
1PASS
|
|
|
0.31428573
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.io.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.testCopyViewSettingsjalview.io.Jalview2xmlTests.testCopyViewSettings
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.io.Jalview2xmlTests.testStoreAndRecoverPDBEntry
|
1PASS
|
|
|
0.31428573
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.io.Jalview2xmlTests.testStoreAndRecoverExpandedviews
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.gatherViewsHerejalview.io.Jalview2xmlTests.gatherViewsHere
|
1PASS
|
|
|
0.31428573
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol
|
1PASS
|
|
|
0.31428573
|
jalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.io.Jalview2xmlTests.noDuplicatePdbMappingsMade
|
1PASS
|
|
|
0.3
|
jalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeaturesjalview.structure.StructureSelectionManagerTest.testSetMapping_seqFeatures
|
1PASS
|
|
|
0.2857143
|
jalview.io.AnnotationFileIOTest.exampleAnnotationFileIOjalview.io.AnnotationFileIOTest.exampleAnnotationFileIO
|
1PASS
|
|
|
0.2857143
|
jalview.io.Jalview2xmlTests.testRNAStructureRecoveryjalview.io.Jalview2xmlTests.testRNAStructureRecovery
|
1PASS
|
|
|
0.2857143
|
jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps
|
1PASS
|
|
|
0.2857143
|
jalview.analysis.AlignmentUtilsTests.testExpandContext_annotationjalview.analysis.AlignmentUtilsTests.testExpandContext_annotation
|
1PASS
|
|
|
0.2857143
|
jalview.io.Jalview2xmlTests.testColourByAnnotScoresjalview.io.Jalview2xmlTests.testColourByAnnotScores
|
1PASS
|
|
|
0.27142859
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO
|
1PASS
|
|
|
0.27142859
|
jalview.io.StockholmFileTest.rfamFileIOjalview.io.StockholmFileTest.rfamFileIO
|
1PASS
|
|
|
0.25714287
|
jalview.io.StockholmFileTest.secondaryStructureForRNASequencejalview.io.StockholmFileTest.secondaryStructureForRNASequence
|
1PASS
|
|
|
0.25714287
|
jalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequence
|
1PASS
|
|
|
0.25714287
|
jalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence
|
1PASS
|
|
|
0.24285714
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO
|
1PASS
|
|
|
0.24285714
|
jalview.datamodel.AlignmentAnnotationTests.testCopyConstructorjalview.datamodel.AlignmentAnnotationTests.testCopyConstructor
|
1PASS
|
|
|
0.24285714
|
jalview.datamodel.SequenceTest.testDeriveSequence_existingDatasetjalview.datamodel.SequenceTest.testDeriveSequence_existingDataset
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBChainTest.testMakeResidueList_noAnnotationmc_view.PDBChainTest.testMakeResidueList_noAnnotation
|
1PASS
|
|
|
0.14285715
|
jalview.ext.jmol.JmolParserTest.testParse_missingResiduesjalview.ext.jmol.JmolParserTest.testParse_missingResidues
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotationsmc_view.PDBfileTest.testParse_withJmolAddAlignmentAnnotations
|
1PASS
|
|
|
0.14285715
|
jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotationjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBChainTest.testMakeCaBondList_nucleotidemc_view.PDBChainTest.testMakeCaBondList_nucleotide
|
1PASS
|
|
|
0.14285715
|
jalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotationsjalview.analysis.AlignmentUtilsTests.testShowOrHideSequenceAnnotations
|
1PASS
|
|
|
0.14285715
|
jalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappingsjalview.structures.models.AAStructureBindingModelTest.testImportPDBPreservesChainMappings
|
1PASS
|
|
|
0.14285715
|
jalview.ext.jmol.JmolParserTest.testParse_alternativeResiduesjalview.ext.jmol.JmolParserTest.testParse_alternativeResidues
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBfileTest.testParse_withAnnotations_noSSmc_view.PDBfileTest.testParse_withAnnotations_noSS
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBChainTest.testMakeCaBondListmc_view.PDBChainTest.testMakeCaBondList
|
1PASS
|
|
|
0.14285715
|
jalview.ext.jmol.JmolParserTest.testLocalPDBIdjalview.ext.jmol.JmolParserTest.testLocalPDBId
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBChainTest.testMakeResidueList_withTempFactormc_view.PDBChainTest.testMakeResidueList_withTempFactor
|
1PASS
|
|
|
0.14285715
|
jalview.datamodel.AlignmentAnnotationTests.testAdjustForAlignmentjalview.datamodel.AlignmentAnnotationTests.testAdjustForAlignment
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBfileTest.testParsemc_view.PDBfileTest.testParse
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBfileTest.testParse_withJmol_noAnnotationsmc_view.PDBfileTest.testParse_withJmol_noAnnotations
|
1PASS
|
|
|
0.14285715
|
mc_view.PDBChainTest.testMakeExactMappingmc_view.PDBChainTest.testMakeExactMapping
|
1PASS
|
|
|
0.114285715
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommand_noFeaturesjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommand_noFeatures
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignFrameTest.testNewView_colourThresholdsjalview.gui.AlignFrameTest.testNewView_colourThresholds
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testPrintJalviewFormatjalview.io.FeaturesFileTest.testPrintJalviewFormat
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testSetGlobalColourSchemejalview.gui.AlignViewportTest.testSetGlobalColourScheme
|
1PASS
|
|
|
0.114285715
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand
|
1PASS
|
|
|
0.114285715
|
jalview.io.gff.GffTests.testResolveExonerateGffjalview.io.gff.GffTests.testResolveExonerateGff
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testSetSelectionGroupjalview.gui.AlignViewportTest.testSetSelectionGroup
|
1PASS
|
|
|
0.114285715
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs
|
1PASS
|
|
|
0.114285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay
|
1PASS
|
|
|
0.114285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testGetColourjalview.renderer.seqfeatures.FeatureRendererTest.testGetColour
|
1PASS
|
|
|
0.114285715
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroup
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly
|
1PASS
|
|
|
0.114285715
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations
|
1PASS
|
|
|
0.114285715
|
jalview.io.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.io.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams
|
1PASS
|
|
|
0.114285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withReference
|
1PASS
|
|
|
0.114285715
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testDeregisterMapping_onCloseViewjalview.gui.AlignViewportTest.testDeregisterMapping_onCloseView
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testDeregisterMapping_withNoReferencejalview.gui.AlignViewportTest.testDeregisterMapping_withNoReference
|
1PASS
|
|
|
0.114285715
|
jalview.gui.PaintRefresherTest.testGetAssociatedPanelsjalview.gui.PaintRefresherTest.testGetAssociatedPanels
|
1PASS
|
|
|
0.114285715
|
jalview.io.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.io.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs
|
1PASS
|
|
|
0.114285715
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns
|
1PASS
|
|
|
0.114285715
|
jalview.schemes.ColourSchemesTest.testRegisterColourSchemejalview.schemes.ColourSchemesTest.testRegisterColourScheme
|
1PASS
|
|
|
0.114285715
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testParse_pureGff3jalview.io.FeaturesFileTest.testParse_pureGff3
|
1PASS
|
|
|
0.114285715
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps
|
1PASS
|
|
|
0.114285715
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup
|
1PASS
|
|
|
0.114285715
|
jalview.io.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.io.Jalview2xmlTests.testStoreAndRecoverColourThresholds
|
1PASS
|
|
|
0.114285715
|
jalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.rbvi.chimera.ChimeraCommandsTest.testGetColourBySequenceCommands_hiddenColumns
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel
|
1PASS
|
|
|
0.114285715
|
jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone
|
1PASS
|
|
|
0.114285715
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup
|
1PASS
|
|
|
0.114285715
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumnjalview.renderer.seqfeatures.FeatureRendererTest.testFindFeaturesAtColumn
|
1PASS
|
|
|
0.114285715
|
jalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumnsjalview.ext.jmol.JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns
|
1PASS
|
|
|
0.114285715
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotationsjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testParsejalview.io.FeaturesFileTest.testParse
|
1PASS
|
|
|
0.114285715
|
jalview.controller.AlignViewControllerTest.testFindColumnsWithFeaturejalview.controller.AlignViewControllerTest.testFindColumnsWithFeature
|
1PASS
|
|
|
0.114285715
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq
|
1PASS
|
|
|
0.114285715
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad
|
1PASS
|
|
|
0.114285715
|
jalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_fromScrolledjalview.gui.SeqCanvasTest.testCalculateWrappedGeometry_fromScrolled
|
3FAIL
|
|
|
0.114285715
|
jalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessagejalview.gui.SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy
|
1PASS
|
|
|
0.114285715
|
jalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePositionjalview.gui.SeqPanelTest.testSetStatusReturnsNearestResiduePosition
|
1PASS
|
|
|
0.114285715
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.simpleGff3FileLoaderjalview.io.FeaturesFileTest.simpleGff3FileLoader
|
1PASS
|
|
|
0.114285715
|
jalview.schemes.ColourSchemesTest.testGetColourSchemejalview.schemes.ColourSchemesTest.testGetColourScheme
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignFrameTest.testHideFeatureColumnsjalview.gui.AlignFrameTest.testHideFeatureColumns
|
1PASS
|
|
|
0.114285715
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testSetGetHasSearchResultsjalview.gui.AlignViewportTest.testSetGetHasSearchResults
|
1PASS
|
|
|
0.114285715
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment
|
1PASS
|
|
|
0.114285715
|
jalview.io.Jalview2xmlTests.testTCoffeeScoresjalview.io.Jalview2xmlTests.testTCoffeeScores
|
1PASS
|
|
|
0.114285715
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks
|
1PASS
|
|
|
0.114285715
|
jalview.gui.FeatureSettingsTest.testSaveLoadjalview.gui.FeatureSettingsTest.testSaveLoad
|
1PASS
|
|
|
0.114285715
|
jalview.gui.AlignViewportTest.testGetConsensusSeqjalview.gui.AlignViewportTest.testGetConsensusSeq
|
1PASS
|
|
|
0.071428575
|
jalview.schemes.ResidueColourSchemeTest.testIsApplicableTojalview.schemes.ResidueColourSchemeTest.testIsApplicableTo
|
1PASS
|
|
|
0.071428575
|
jalview.datamodel.ColumnSelectionTest.testFilterAnnotationsjalview.datamodel.ColumnSelectionTest.testFilterAnnotations
|
1PASS
|
|
|
0.071428575
|
jalview.datamodel.AlignmentAnnotationTests.testGetDefaultRnaHelixSymboljalview.datamodel.AlignmentAnnotationTests.testGetDefaultRnaHelixSymbol
|
1PASS
|
|
|
0.071428575
|
jalview.analysis.AAFrequencyTest.testCompleteConsensus_includeGaps_showLogojalview.analysis.AAFrequencyTest.testCompleteConsensus_includeGaps_showLogo
|
1PASS
|
|
|
0.071428575
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction
|
1PASS
|
|
|
0.071428575
|
jalview.analysis.AAFrequencyTest.testCompleteConsensus_ignoreGaps_noLogojalview.analysis.AAFrequencyTest.testCompleteConsensus_ignoreGaps_noLogo
|
1PASS
|
|
|
0.071428575
|
jalview.datamodel.AlignmentAnnotationTests.testIsQuantitativejalview.datamodel.AlignmentAnnotationTests.testIsQuantitative
|
1PASS
|
|