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Coverage Report

  1. Project Clover database Thu Aug 13 2020 12:04:21 BST
  2. Package jalview.schemes

File JalviewColourScheme.java

 

Coverage histogram

../../img/srcFileCovDistChart10.png
0% of files have more coverage

Code metrics

0
4
3
1
87
35
3
0.75
1.33
3
1

Classes

Class Line # Actions
JalviewColourScheme 26 4 3
1.0100%
 

Contributing tests

This file is covered by 105 tests. .

Source view

1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.schemes;
22   
23    /**
24    * An enum with the colour schemes supported by Jalview.
25    */
 
26    public enum JalviewColourScheme
27    {
28    /*
29    * the order of declaration is the default order in which
30    * items are added to Colour menus
31    */
32    Clustal("Clustal", ClustalxColourScheme.class),
33    Blosum62("Blosum62", Blosum62ColourScheme.class),
34    PID("% Identity", PIDColourScheme.class),
35    Zappo("Zappo", ZappoColourScheme.class),
36    Taylor("Taylor", TaylorColourScheme.class),
37    Hydrophobic("Hydrophobic", HydrophobicColourScheme.class),
38    Helix("Helix Propensity", HelixColourScheme.class),
39    Strand("Strand Propensity", StrandColourScheme.class),
40    Turn("Turn Propensity", TurnColourScheme.class),
41    Buried("Buried Index", BuriedColourScheme.class),
42    Nucleotide("Nucleotide", NucleotideColourScheme.class),
43    PurinePyrimidine("Purine/Pyrimidine", PurinePyrimidineColourScheme.class),
44    RNAHelices("RNA Helices", RNAHelicesColour.class),
45    TCoffee("T-Coffee Scores", TCoffeeColourScheme.class),
46    IdColour("Sequence ID", IdColourScheme.class);
47    // RNAInteraction("RNA Interaction type", RNAInteractionColourScheme.class)
48   
49    private String name;
50   
51    private Class<? extends ColourSchemeI> myClass;
52   
53    /**
54    * Constructor given the name of the colour scheme (as used in Jalview
55    * parameters). Note this is not necessarily the same as the 'display name'
56    * used in menu options (as this may be language-dependent).
57    *
58    * @param s
59    */
 
60  270 toggle JalviewColourScheme(String s, Class<? extends ColourSchemeI> cl)
61    {
62  270 name = s;
63  270 myClass = cl;
64    }
65   
66    /**
67    * Returns the class of the colour scheme
68    *
69    * @return
70    */
 
71  300 toggle public Class<? extends ColourSchemeI> getSchemeClass()
72    {
73  300 return myClass;
74    }
75   
76    /**
77    * Returns the 'official' name of this colour scheme. This is the name that
78    * identifies the colour scheme as a start-up parameter for the Jalview
79    * application or applet. Note that it may not be the name shown in menu
80    * options, as these may be internationalised.
81    */
 
82  4288 toggle @Override
83    public String toString()
84    {
85  4288 return name;
86    }
87    }
  • Report generated by OpenClover v 4.4.1 on Thu Aug 13 2020 12:06:48 BST using coverage data from Thu Aug 13 2020 12:06:40 BST.
  • OpenClover is free and open-source software.